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Host Resistance to Rhynchosporium commune

Yıl 2024, Cilt: 38 Sayı: 1, 221 - 241, 14.06.2024
https://doi.org/10.20479/bursauludagziraat.1353738

Öz

Rhynchosporium commune is a haploid fungus that causes scald on barley (Hordeum vulgare), other Hordeum species and Bromus diandrus. It is found in all temperate growing regions of the world and is considered one of the most economically important pathogens of barley. The most effective and sustainable method of controlling the disease is the use of resistant cultivars. The pathogen has the ability to evolve new virulent genotypes against the resistance genes used in commercial cultivars. Therefore, introgression and pyramiding of different loci (qualitative or quantitative) by marker-assisted selection is very important for resistance breeding. This review summarizes the genetic variation of the pathogen, host-pathogen interactions, genes involved in resistance, resistance to R. commune in landraces and wild genotypes, and host resistance to R. commune in our country from the past to the present.

Kaynakça

  • Abbott, D.C., Brown, A.H.D. and Burdon, J.J. 1992. Genes for scald-resistance from wild barley (Hordeum vulgare ssp. spontaneum) and their linkage to isozyme markers. Euphytica, 225–231.
  • Abbott, D.C., Lagudah, E.S. and Brown, A.H.D. 1995. Identification of RFLPs flanking a scald resistance gene on barley chromosome 6. The Journal of Heredity, 86: 152–154.
  • Aktaş H. 1984. Spread of leaf spots in barley growing areas in Turkey. Proc. 6th Congr. Un. Phytopath. Mediterr. Cairo, Egypt. 338-441.
  • Avrova, A. and Knogge, W. 2012. Rhynchosporium commune: a persistent threat to barley cultivation. Molecular Plant Pathology, 13: 986–997.
  • Ayesu-Offei, E. and Clare, B. 1970. Processes in the infection of barley leaves by Rhynchosporium secalis. Australian Journal of Biological Sciences, 23: 300–308.
  • Azamparsa, M. R. and Karakaya, A. 2020. Determination of the pathotypes of Rhynchosporium commune (Zaffarona, McDonald & Linde) in some regions of Turkey. Plant Protection Bulletin, 60 (3): 5-14.
  • Azamparsa, M. R., Karakaya, A., Ergün, N., Sayim, I., Duran, R. M. and Özbek, K. 2019. Identification of barley landraces and wild barley (Hordeum spontaneum) genotypes resistant to Rhynchosporium commune. Journal of Agricultural Sciences, 25(4): 530-535.
  • Baker, R.J. and Larter, E.N. 1963. The inheritance of scald resistance in barley. Canadian Journal of Genetics and Cytology, 5: 445–449.
  • Barua, U.M., Chalmers, K.J., Hackett, C.A., Thomas, W.T.B., Powell, W. and Waugh, R. 1993. Identification of RAPD markers linked to a Rhynchosporium-secalis resistance locus in barley using near-isogenic lines and bulked segregant analysis. Heredity, 71: 177–184.
  • Bjørnstad, A., Grønnerød, S., Mac Key, J., Tekauz, A., Crossa, J. and Martens, H. 2004. Resistance to barley scald (Rhynchosporium secalis) in the Ethiopian donor lines ‘Steudelli’ and ‘Jet’, analyzed by partial least squares regression and interval mapping. Hereditas, 141(2): 166-179.
  • Bjørnstad, A., Patil, V., Tekauz, A., Maroy, G., Skinnes, H. ve Jensen, A., Magnus, H. and Mackey, J. 2002. Resistance to scald (Rhynchosporium secalis) in barley (Hordeum vulgare) studied by near-isogenic lines: I. Markers and differential isolates. Phytopathology, 92: 710–720.
  • Bockelman, H.E., Sharp, E.L. and Eslick, R.F. 1977. Trisomic analysis of genes for resistance to scald and net blotch in several barley cultivars. Canadian Journal of Botany, 55: 2142–2148.
  • Bouajila, A., Abang, M.M., Haouas, S., Udupa, S., Rezgui, S. and Baum, M. 2007. Genetic diversity of Rhynchosporium secalis in Tunisia as revealed by pathotype, AFLP, and microsatellite analyses. Mycopathologia, 163: 281–294.
  • Bouajila, A., Zoghlami, N., Ghorbel, A., Rezgui, S. and Yahyaoui, A. 2010. Pathotype and microsatellite analyses reveal new sources of resistance to barley scald in Tunisia. FEMS Microbiology Letters, 305: 35–41.
  • Boyd, L.A., Ridout, C., O'Sullivan, D.M., Leach, J.E. and Leung, H. 2013. Plant–pathogen interactions: disease resistance in modern agriculture. Trends in Genetics, 29: 233–240.
  • Brunner, P.C., Schurch, S. and McDonald, B.A. 2007. The origin and colonization history of the barley scald pathogen Rhynchosporium secalis. Journal of Evolutionary Biology, 20: 1311–1321.
  • Brunner, P.C., Stefansson, T.S., Fountaine, J., Richina, V. and McDonald, B.A. 2015. A global analysis of CYP51 diversity and azole sensitivity in Rhynchosporium commune. Phytopathology, 106: 355–361.
  • Büttner, B. Draba, V. Pillen, K. Schweizer, G. and Maurer, A. 2020. Identification of QTLs conferring resistance to scald (Rhynchosporium commune) in the barley nested association mapping population HEB-25. BMC Genom, 21: 1–12.
  • Chelkowski , J., Tyrka, M. and Sobkiewicz, A. 2003. Resistance genes in barley (Hordeum vulgare L.) and their identification with molecular markers. Journal of Applied Genetics, 44(3): 291-310.
  • Clare, S. J., Çelik Oğuz, A., Effertz, K., Karakaya, A., Azamparsa, M. R. and Brueggeman, R. S. 2023. Wild barley (Hordeum spontaneum) and landraces (Hordeum vulgare) from Turkey contain an abundance of novel Rhynchosporium commune resistance loci. Theoretical and Applied Genetics, 136(1): 1-14.
  • Clare, S. J., Wyatt, N. A., Brueggeman, R. S. and Friesen, T. L. 2020. Research advances in the Pyrenophora teres–barley interaction. Molecular plant pathology, 21(2): 272-288.
  • Cooke, L.R., Locke, T., Lockley, K.D., Phillips, A.N., Sadiq, M.D.S., Coll, R., Black, L., Taggart, P.J. and Mercer, P.C. 2004. The effect of fungicide programmes based on epoxiconazole on the control and DMI sensitivity of Rhynchosporium secalis in winter barley. Crop Protection, 23: 393–406.
  • Cooper, M., Messina, C.D., Podlich, D., Totir, L.R., Baumgarten, A., Hausmann, N.J., Wright, D. and Graham, G. 2014. Predicting the future of plant breeding: complementing empirical evaluation with genetic prediction. Crop and Pasture Science, 65: 311–336.
  • Cope, J.E., Norton, J., George, G.T.S. and Newton, A.C. 2021. Identifying potential novel resistance to the foliar disease ‘Scald’(Rhynchosporium commune) in a population of Scottish Bere barley landrace (Hordeum vulgare L.). Journal of Plant Diseases and Protection, 128: 999–1012.
  • Coulter, M., Büttner, B., Hofmann, K., Bayer, M., Ramsay, L., Schweizer, G., Waugh, R., Looseley, M. E. and Avrova. 2019. Characterisation of barley resistance to Rhynchosporium on chromosome 6HS. Theoretical and Applied Genetics, 132: 1089–1107.
  • Crous, P. W., Braun, U., McDonald, B. A., Lennox, C. L., Edwards, J., Mann, R. C. and Groenewald, J. Z. 2021. Redefining genera of cereal pathogens: Oculimacula, Rhynchosporium and Spermospora. Fungal systematics and evolution, 7(1): 67-98.
  • Çelik Oğuz, A., Ölmez, F., Karakaya, A. and Azamparsa, M. R. 2021. Genetic variation and mating type distribution of Rhynchosporium commune in Turkey. Physiological and Molecular Plant Pathology, 114: 101614.
  • Daba, S.D., Horsley, R., Brueggeman, R., Chao, S. and Mohammadi, M. 2019. Genome-wide association studies and candidate gene identification for leaf scald and net blotch in barley (Hordeum vulgare L.). Plant Disease, 103: 880–889.
  • Damgacı, E. 1981. Orta Anadolu bölgesi arpa ekilişlerinde Rhynchosporium yaprak lekesi (R. secalis (Oud.) J. J. Davis) hastalığı üzerine araştırmalar. Zirai Mücadele Araştırma Yıllığı, 101-102.
  • de los Campos, G., Hickey, J.M., Pong-Wong, R., Daetwyler, H.D. and Calus, M.P.L. 2013. Whole genome regression and prediction methods applied to plant and animal breeding. Genetics, 193: 327–345.
  • Desta, Z.A. and Ortiz, R. 2014. Genomic selection: genome-wide prediction in plant improvement. Trends in Plant Science, 19: 592–601.
  • Döken, M. T. 1979. Erzurum'da arpadan izole edilen Rhynchosporium secalis (Oudem.) J. J. Davis'in morfolojisi, biyolojisi, zarar durumu ve savaş yöntemleri üzerinde araştırmalar. Doçentlik Tezi. Atatürk Üniv. Zir. Fak. Bitki Koruma Bölümü, Erzurum.
  • Düşünceli, F., Çetin, L., Albustan, S., Mert, Z., Akan, K. and Karakaya, A. 2008. Determination of the reactions of some barley cultivars and genotypes to scald under greenhouse and field conditions. Tarım Bilimleri Dergisi, 14 (1): 46-50.
  • Dyck, P.L. and Schaller, C.W. 1961. Inheritance of resistance in barley to several physiologic races of the scald fungus. Canadian Journal of Genetics and Cytology, 3, 153–164.
  • Garvin, D.F., Brown, A.H.D., Raman, H. and Read, B.J. 2000. Genetic mapping of the barley Rrs14 scald resistance gene with RFLP, isozyme and seed storage protein markers. Plant Breeding, 119: 193–196.
  • Genger, R.K. Williams, K.J., Raman, H., Read, B.J., Wallwork, H., Burdon, J.J. and Brown, A. H. D. 2003b. Leaf scald resistance genes in Hordeum vulgare and Hordeum vulgare ssp spontaneum: parallels between cultivated and wild barley. Australian Journal of Agricultural Research, 54: 1335–1342.
  • Genger, R.K., Brown, A.H.D., Knogge, W., Nesbitt, K. and Burdon, J.J. 2003a. Development of SCAR markers linked to a scald resistance gene derived from wild barley. Euphytica, 134: 149–159.
  • Genger, R.K., Nesbitt, K., Brown, A.H.D., Abbott, D.C. and Burdon, J.J. 2005. A novel barley scald resistance gene: genetic mapping of the Rrs15 scald resistance gene derived from wild barley, Hordeum vulgare ssp. spontaneum. Plant Breeding, 124: 137–141.
  • Göbelez, M. 1964. La mycoflore de Turque II. Mycopathologia Applicata, 23 (1): 47-67.
  • Gyawali, S. 2018. Genome wide association studies (GWAS) of spot blotch resistance at the seedling and the adult plant stages in a collection of spring barley. Molecular Breeding, 38.
  • Habgood, R.M. and Hayes, J.D. 1971. The inheritance of resistance to Rhynchosporium secalis in barley. Heredity, 27: 25–37.
  • Habier, D., Fernando, R.L. and Garrick, D.J. 2013. Genomic BLUP decoded: a look into the black box of genomic prediction. Genetics, 194: 597–607.
  • Hahn, M., Jungling, S. and Knogge, W. 1993. Cultivar-specific elicitation of barley defense reactions by the phytotoxic peptide Nip1 from Rhynchosporium secalis. Molecular Plant-Microbe Interactions, 6: 745–754.
  • Hanemann, A., Schweizer, G.F., Cossu, R., Wicker, T. and Roder, M.S. 2009. Fine mapping, physical mapping and development of diagnostic markers for the Rrs2 scald resistance gene in barley. Theoretical and Applied Genetics, 119: 1507–1522.
  • Hansen, L.R. and Magnus, H.A. 1973. Virulence spectrum of Rhynchosporium secalis in Norway and sources of resistance in barley. Journal of Phytopathology, 76: 303–313.
  • Hawkins, N.J., Cools, H.J., Sierotzki, H., Shaw, M.W., Knogge, W. Kelly, S.L., Kelly, D.E. and Fraaije, B. A. 2014. Paralog re-emergence: a novel, historically contingent mechanism in the evolution of antimicrobial resistance. Molecular Biology and Evolution, 31: 1793–1802.
  • Heffner, E.L., Jannink, J.-L. and Sorrells, M.E. 2011. Genomic selection accuracy using multifamily prediction models in a wheat breeding program. The Plant Genome, 4: 65–75.
  • Hekimhan, H., Büyük, O., Ünal F., Araz, A., Yorgancılar, A., Özkeskin, M. E., Torun, A., Yüksel, S., Çelik, E. ve Kaymak, S. 2021. Tarla koşullarında suni inokulasyon ile bazı arpa genotiplerinin Rhynchosporium commune (Zaffarano, Mc Donalds&Linde) arpa yaprak yanıklığı hastalığına karşı reaksiyonlarının belirlenmesi. Anadolu Ege Tarımsal Araştırma Enstitüsü Dergisi, 31(1): 47-60.
  • Hofmann, K. 2015. Phenotypic assessment and genetic mapping of genes conferring resistance to leaf scald (Rhynchosporium commune) in barley (Hordeum vulgare).http://geb.unigiessen.de/geb/volltexte/2015/11816/.
  • Hofmann, K., Silvar, C., Casas, A.M., Herz, M., Buttner, B. and Gracia, M.P. 2013. Fine mapping of the Rrs1 resistance locus against scald in two large populations derived from Spanish barley landraces. Theoretical and Applied Genetics, 126: 3091–3102.
  • Johnson, A.G. and Mackie, W.W. 1920. Evidence of disease resistance in barley to attacks of Rhynchosporium. Phytopathology, 10: 54.
  • Jørgensen, L. Neergaard, D. and Smedegaard-Petersen, V. 1993. Histological examination of the interaction between Rhynchosporium secalis and susceptible and resistant cultivars of barley. Physiological and Molecular Plant Pathology, 42: 345–358.
  • Karakaya, A., Mert, Z., Oguz, A.Ç., Azamparsa, M.R., Çelik, E., Akan, K. and Çetin, L. 2014. Current status of scald and net blotch diseases of barley in Turkey. pp 31. In: 1st International Workshop On Barley Leaf Diseases, Salsomaggiore Terme.03-06 June. Italy.
  • Kavak, H. 1998. Şanlıurfa yöresinde ekimi yapılan bazı arpa çeşitlerinin arpa yaprak lekesine (Rhynchosporium secalis (Oudem.) J.J. Davis) karşı reaksiyonları ve hastalık şiddeti ile verim arasındaki ilişkinin belirlenmesi. Doktora tezi. Gaziosmanpaşa Üniversitesi, Fen Bilimleri Enstitüsü Bitki Koruma Ana Bilim Dalı. Tokat.
  • Kiros-Meles, A., Gomez, D., McDonald, B.A., Yahyaoui, A. and Linde, C.C. 2011. Invasion of Rhynchosporium commune onto wild barley in the Middle East. Biological Invasions, 13: 321–330.
  • Kirsten, S., Navarro-Quezada, A., Penselin, D., Wenzel, C., Matern, A.ve Leitner, A., Baum, T., Seiffert, U. and Knogge, W. 2012. Necrosis-inducing proteins of Rhynchosporium commune, effectors in quantitative disease resistance. Molecular Plant-Microbe Interactions, 25: 1314–1325.
  • Korte, A. and Farlow, A. 2013. The advantages and limitations of trait analysis with GWAS: a review. Plant Methods, 9: 29–29.
  • Kün, E. 1996. Tahıllar-1 (Serin İklim Tahılları). Ankara Üniversitesi Ziraat Fakültesi Yayınları, Yayın No: 1451. Ankara.
  • Lehnackers, H. and Knogge, W. 1990 Cytological studies on the infection of barley cultivars with known resistance genotypes by Rhynchosporium secalis. Canadian Journal of Botany, 68: 1953–1961.
  • Linde, C.C., Zala, M. and McDonald, B.A. 2009. Molecular evidence for recent founder populations and human-mediated migration in the barley scald pathogen Rhynchosporium secalis. Molecular Phylogenetics and Evolution, 51: 454–464.
  • Linde, C.C., Smith, L. M. and Peakall, R. 2016. Weeds, as ancillary hosts, pose disproportionate risk for virulent pathogen transfer to crops. BMC Evolutionary Biology, 16:101.
  • Locke, T. and Phillips, A. 1995. The occurrence of carbendazim resistance in Rhynchosporium secalis on winter barley in England and Wales in 1992 and 1993. Plant Pathology, 44: 294–300.
  • Looseley, M. E., Newton, A. C., Atkins, S. D., Fitt, B. D., Fraaije, B. A., Thomas, W. T. B. and Harrap, D. 2012. Genetic basis of control of Rhynchosporium secalis infection and symptom expression in barley. Euphytica, 184: 47-56.
  • Looseley, M.E., Griffe, L.L., Büttner, B., Wright, K.M., Bayer, M.M., Coulter, M., Thauvin, J.N., Middlefell-Williams, J.,Maluk, M., Okpo, A., Kettles, N., Werner, P., Byrne, E. and Avrova, A. 2020. Characterisation of barley landraces from Syria and Jordan for resistance to Rhynchosporium and identification of diagnostic markers for Rrs1Rh4. Theoretical and Applied Genetics, 133: 1243–1264.
  • Looseley, M.E., Griffe, L.L., Büttner, B., Wright, K.M., Middlefell-Williams, J., Bull, H. Shaw, P.D., Macaulay, M., Booth, A., Schweizer,G., Russell, J.R., Waugh, R., Thomas W.T.B. and Avrova, A. 2018. Resistance to Rhynchosporium commune in a collection of European spring barley germplasm. Theoretical and Applied Genetics, 131: 2513–2528.
  • Lorenz, A.J., Chao, S., Asoro, F.G., Heffner, E.L., Hayashi, T., Iwata, H. Smith, K.P., Sorrells, M. E. and Jannink, J. L. 2011. Genomic selection in plant breeding: knowledge and prospects. Advances in Agronomy, 110: 77–123.
  • Lorenz, A.J., Smith, K.P. and Jannink, J.-L. 2012. Potential and optimization of genomic selection for fusarium head blight resistance in sixrow barley. Crop Science, 52:1609–1621.
  • Mamluk, O. F., Çetin, L., Braun, H. J., Bolat, N., Bertschinger, L., Makkouk, K. M., Yıldırım, A. F., Saari, E., Zencirci, E., Albustan, N., Çalı, S., Beniwal, S. P., and Düşünceli., F. 1997. Current status of wheat and barley diseases in the Central Anatolian Plateau of Turkey. Phytopathol. Med, 36: 167–81.
  • Mathre, D.E. 1982. Compendium of barley diseases. Aps Press.
  • McDonald, B.A. 2015. How can research on pathogen population biology suggest disease management strategies? The example of barley scald (Rhynchosporium commune). Plant Pathology, 64: 1005–1013.
  • McDonald, B.A., Zhan, J. and Burdon, J.J. 1999. Genetic structure of Rhynchosporium secalis in Australia. Phytopathology, 89: 639–645.
  • McLean, M.S. and Hollaway, G.J. 2018. Suppression of scald and improvements in grain yield and quality of barley in response to fungicides and host-plant resistance. Australasian Plant Pathology, 47: 13–21.
  • Mert, Z. and Karakaya, A. 2004. Assessment of the seedling reactions of Turkish barley cultivars to scald. Journal of Phytopathology, 152: 190-192.
  • Mert, Z., Karakaya A., Çelik Oğuz, A., Azamparsa M.R., Ergün N. and Sayim, İ. 2014. Field Evaluation of Some Turkish Barley Landraces to Scald and Net Blotch of Barley. IWBLD – 1st International Workshop on Barley Leaf Diseases, 64-64.
  • Meuwissen, T.H.E., Hayes, B.J. and Goddard, M.E. 2001. Prediction of total genetic value using genome-wide dense marker maps. Genetics, 157: 1819–1829.
  • Mohd-Assaad, N., McDonald, B.A. and Croll, D. 2016. Multilocus resistance evolution to azole fungicides in fungal plant pathogen populations. Molecular Ecology, 25: 6124–6142.
  • Mohd-Assaad, N., McDonald, B.A. and Croll, D. 2019. The emergence of the multi-species NIP1 effector in Rhynchosporium was accompanied by high rates of gene duplications and losses. Environmental Microbiology, 21: 2677–2695.
  • Novakazi, F., Göransson, M., Stefánsson, T.S., Jalli, M. and Hallsson, J. H. 2021 Virulence of Rhynchosporium commune isolates collected in Iceland. Journal of Plant Pathology, 103: 935–942.
  • Özdemir, H. Y., Karakaya, A. ve Çelik Oğuz, A. 2017. Kırıkkale ilinde buğday ve arpa ekim alanlarında görülen fungal yaprak hastalıklarının belirlenmesi. Bitki Koruma Bülteni, 57(2): 89-112.
  • Penselin, D., Münsterkötter, M., Kirsten, S., Felder, M., Taudien, S., Platzer, M., Ashelford, K., Paskiewicz, K. H., Harrison, R. J., Hughes, D. J., Wolf, T., Shelest, E., Graap, J., Hoffmann, J., Wenzel, C., Wöltje, N., King, K. M., Fitt, B. D. L., Güldener, U., Avrova, A. and Knogge, W. 2016. Comparative genomics to explore phylogenetic relationship, cryptic sexual potential and host specificity of Rhynchosporium species on grasses. BMC Genomics, 17: 953.
  • Pickering, R., Ruge-Wehling, B., Johnston, P.A., Schweizer, G., Ackermann, P. and Wehling, P. 2006. The transfer of a gene conferring resistance to scald (Rhynchosporium secalis) from Hordeum bulbosum into H. vulgare chromosome 4HS. Plant Breeding, 125: 576–579.
  • Ponce-Molina, L.J. 2012. Quantitative trait loci and candidate loci for heading date in a large population of a wide barley cross, Crop Science, 52: 2469–2480.
  • Read, B.J., Luckett, D.J., Smithard, R.A. and Brown, A.H.D. 1998. Register of Australian winter cereal cultivars Hordeum vulgare cv. Tantangara. Australian Journal of Experimental Agriculture, 38: 207–207.
  • Read, B.J., Raman, H., McMichael, G., Chalmers, K.J., Ablett, G.A.ve Platz, G.J. Raman, R., Genger, R.K., Boyd, W.J.R., Li, C.D., Grime, C.R., Park, R.F., Wallwork, H., Prangnell, R. and Lance, R.C.M. 2003. Mapping and QTL analysis of the barley population Sloop × Halcyon. Australian Journal of Agricultural Research, 54: 1145–1153.
  • Rehman, S., Amouzoune, M., Hiddar, H., Aberkane, H., Benkirane, R., Filali‐Maltouf, A. and Amri, A. 2021. Traits discovery in Hordeum vulgare sbsp. spontaneum accessions and in lines derived from interspecific crosses with wild Hordeum species for enhancing barley breeding efforts. Crop Science, 61(1): 219-233.
  • Richards, J., Chao, S., Friesen, T. and Brueggeman, R. 2016. Fine mapping of the barley chromosome 6H net form net blotch susceptibility locus. G3 Genes Genomes Genetics, 6: 1809–181.
  • Riddle O.C. and Suneson C.A. 1948. Sources and use of scald resistance in barley, J. Am. Soc. Agron, 40. Riddle, O.C. and Briggs F.N. 1950. Inheritance of resistance to scald in barley, Hilgardia, 20: 19–27.
  • Robbertse, B., van der Rijst, M., van Aarde, I.M.R., Lennox, C. and Crous, P.W. 2001. DMI sensitivity and cross-resistance patterns of Rhynchosporium secalis isolates from South Africa. Crop Protection, 20: 97–102.
  • Rohe, M., Gierlich, A., Hermann, H., Hahn, M., Schmidt, B.ve Rosahl, S. and Knogge, W. 1995. The race-specific elicitor, NIP1, from the barley pathogen, Rhynchosporium secalis, determines avirulence on host plants of the Rrs1 resistance genotype. The EMBO Journal, 14: 4168–4177.
  • Sallam, A.H., Endelman, J.B., Jannink, J.-L. and Smith, K.P. 2015. Assessing genomic selection prediction accuracy in a dynamic barley breeding population. The Plant Genome, 8: 1–15.
  • Sayed, H. and Baum, M. 2018. Marker-assisted selection for scald (Rhynchosporium commune L.) resistance gene (s) in barley breeding for dry areas. Journal of Plant Protection Research, 58.
  • Schurch, S., Linde, C.C., Knogge, W., Jackson, L.F. and McDonald, B.A. 2004. Molecular population genetic analysis differentiates two virulence mechanisms of the fungal avirulence gene NIP1. Molecular Plant-Microbe Interactions, 17: 1114–1125.
  • Schürch, S., Linde, C.C., Knogge, W., Jackson, L.F. and McDonald, B.A. 2004. Molecular population genetic analysis differentiates two virulence mechanisms of the fungal avirulence gene NIP1. Molecular Plant–Microbe Interactions, 17: 1114–1125.
  • Seifollahi, E., Shariifnabi, B., Javan-Nikkhah, M. and Linde, C.C. 2018. Low genetic diversity of Rhynchosporium commune in Iran, a secondary centre of barley origin. Plant Pathology, 67:1725–1734.
  • Shipton, W.A., Boyd, W.J.R. and Ali, S.M. 1974. Scald of barley. Review of Plant Pathology, 53: 839–861.
  • Shoaib, A., Aldaoude A., Arabi M.I.E., Al-Shehadah E. and Jawhar M. 2018. Transcriptome profiling reveals distinct gene activations in barley responding to scald and spot blotch. Cereal Research Communications, 46: 490–498.
  • Siersleben, S., Penselin, D., Wenzel, C., Albert, S. and Knogge, W. 2014. PFP1, a gene encoding an Epc-N domain-containing protein, is essential for pathogenicity of the barley pathogen Rhynchosporium commune. Eukaryotic Cell, 13: 1026–1035.
  • Silvar, C., Casas, A. M., Kopahnke, D., Habekuß, A., Schweizer, G., Gracia, M. P., Lasa, J. M., Ciudad, F. J., Molina-Cano, J. L., Igartua, E. and Ordon, F. 2010. Screening the Spanish barley core collection for disease resistance. Plant Breeding, 129; 45–52,
  • Stefansson, T.S., Serenius, M. and Hallsson, J.H. 2012. The genetic diversity of Icelandic populations of two barley leaf pathogens, Rhynchosporium commune and Pyrenophora teres. European Journal of Plant Pathology, 134: 167–180.
  • Stefansson, T.S., Willi, Y., Croll, D. and McDonald, B.A. 2014. An assay for quantitative virulence in Rhynchosporium commune reveals an association between effector genotype and virulence. Plant Pathology, 63: 405–414.
  • Steiner-Lange, S., Fischer, A., Boettcher, A., Rouhara, I., Liedgens, H., Schmelzer, E. and Knogge, W. 2003. Differential defense reactions in leaf tissues of barley in response to infection by Rhynchosporium secalis and to treatment with a fungal avirulence gene product. Molecular Plant Microbe Interactions, 16: 893–902.
  • Taş, B. ve Yürür, N. 2002. Bursa ekolojik koşullarında bazı yabancı iki sıralı arpa (Hordeum vulgare distichon) çeşitlerinin kimi verim ve kalite özelliklerinin incelenmesi. Bursa Uludag Üniv. Ziraat Fak. Derg. 16 (1): 117-127.
  • Thirugnanasambandam, A., Wright, K.M., Atkins, S.D., Whisson, S.C. and Newton, A.C. 2011. Infection of Rrs1 barley by an incompatible race of the fungus Rhynchosporium secalis expressing the green fluorescent protein. Plant Pathology, 60: 513–521.
  • Topp, C.F.E., Hughes, G., Nevison, I.M., Butler, A., Oxley, S.J.P. and Havis, N.D. 2019. Rhynchosporium leaf scald disease incidence: seed source and spatial pattern. Plant Pathology, 68: 1179–1187.
  • Van Leur, J.A.G., Ceccarelli, S. and Grando, S. 1989. Diversity for disease resistance in barley landraces from Syria and Jordan. Plant Breeding, 103: 324–335.
  • Von Korff, M., Wang, H., Léon, J. and Pillen, K. 2005. AB-QTL analysis in spring barley. I. Detection of resistance genes against powdery mildew, leaf rust and scald introgressed from wild barley. Theoretical and Applied Genetics, 111: 583–590.
  • Walters, D. R., Avrova, A., Bingham, I. J., Burnett, F. J., Fountaine, J., Havis, N. D., Hoad, S.P., Hughes, G., Looseley, M., Oxley, S.J.P., Renwick, A., Topp, C.F.E. and Newton, A.C. 2012. Control of foliar diseases in barley: towards an integrated approach. European Journal of Plant Pathology, 133: 33-73.
  • Wang, Y., Gupta, S., Wallwork, H., Zhang, X.-Q., Zhou, G., Broughton, S., Loughman, R., Lance, R., Wu, D., Shu, X. and Li, C. 2014. Combination of seedling and adult plant resistance to leaf scald for stable resistance in barley. Molecular Breeding, 34: 2081–2089.
  • Wevelsiep, L., Rupping, E. and Knogge, W. 1993. Stimulation of barley plasmalemma H+-ATPase by phytotoxic peptides from the fungal pathogen Rhynchosporium secalis. Plant Physiology, 101: 297–301.
  • Xue, G. and Hall, R. 1991. Components of parasitic fitness in Rhynchosporium secalis and quantitative resistance to scald in barley as determined with a dome inoculation chamber. Canadian Journal of Plant Pathology, 13: 19–25.
  • Yitbarek, S. 1998. Variation in Ethiopian barley landrace populations for resistance to barley leaf scald and netblotch. Plant Breeding, 117: 419–423.
  • Zaffarano P.L., McDonald B.A. and Linde C.C. 2009. Phylogeographical analyses reveal global migration patterns of the barley scald pathogen Rhynchosporium secalis. Molecular Ecology, 18.
  • Zaffarano, P.L., McDonald, B.A. and Linde, C.C. 2011. Two new species of Rhynchosporium. Mycologia, 103: 195–202.
  • Zaffarano, P.L., McDonald, B.A., Zala, M. and Linde, C.C. 2006. Global hierarchical gene diversity analysis suggests the Fertile Crescent is not the center of origin of the barley scald pathogen Rhynchosporium secalis. Phytopathology, 96: 941–950.
  • Zantinge, J., Xue, S., Holtz, M., Xi, K. and Juskiw, P. 2019. The identifcation of multiple SNP markers for scald resistance in spring barley through restriction-site associated sequencing. Euphytica, 215: 8.
  • Zencirci, N. and Hayes, P. M. 1990. Effect of scald (Rhynchosporium secalis) on yield components of twelve winter barley genotypes. Journal of Turkish Phytopathology, 82: 798-803.
  • Zhan, J., Fitt, B.D.L., Pinnschmidt, H.O., Oxley, S.J.P. and Newton, A.C. 2008. Resistance, epidemiology and sustainable management of Rhynchosporium secalis populations on barley. Plant Pathology, 57: 1–14.
  • Zhan, J., Linde, C.C., Jürgens, T., Merz, U., Steinebrunner, F. and McDonald, B.A. 2005. Variation for neutral markers is correlated with variation for quantitative traits in the plant pathogenic fungus Mycosphaerella graminicola. Molecular Ecology, 14: 2683–2693.
  • Zhang X., Ovenden, B. and Milgate, A. 2020. Recent insights into barley and Rhynchosporium commune interactions. Molecular Plant Pathology, 21: 1111–1128.
  • Zhang, Q., Webster, R.K., Crandall, B.A., Jackson, L.F. and Saghai Maroof, M.A. 1992. Race composition and pathogenicity associations of Rhynchosporium secalis in California. Phytopathology, 82: 798–803.
  • Zhang, X. 2019. Bivariate analysis of barley scald resistance with relative maturity reveals a new major QTL on chromosome 3H. Scientific Reports, 9: 1–11.
  • Zhang, X., Shabala, S., Koutoulis, A., Shabala, L. and Zhou, M. 2017. Meta-analysis of major QTL for abiotic stress tolerance in barley and implications for barley breeding. Planta, 245: 283–295.
  • Zhu, C., Gore, M., Buckler, E.S. and Yu, J. 2008. Status and prospects of association mapping in plants. The Plant Genome, 1: 5–20.

Rhynchosporium commune’ye Karşı Konukçu Dayanıklılığı

Yıl 2024, Cilt: 38 Sayı: 1, 221 - 241, 14.06.2024
https://doi.org/10.20479/bursauludagziraat.1353738

Öz

Rhynchosporium commune, arpa (Hordeum vulgare), diğer Hordeum türlerinde ve Bromus diandrus üzerinde yaprak lekesi hastalığına neden olan haploid bir fungustur. Dünya çapında tüm ılıman yetiştirme bölgelerinde bulunmakta ve ekonomik açıdan en önemli arpa patojenlerinden biri olarak kabul edilmektedir. Hastalığın kontrolünde en etkili ve sürdürülebilir yöntem dayanıklı çeşit kullanımıdır. Patojen ticari çeşitlerde kullanılan dayanıklılık genlerine karşı yeni virülent genotiplerini geliştirme yeteneğine sahiptir. Bu nedenle, markör destekli seleksiyon yolu ile farklı lokusların (niteliksel veya niceliksel) tanılanması ve piramitlenmesi dayanıklılık ıslahı açısından oldukça önemlidir. Bu derleme ile patojenin genetik varyasyonu, konukçu-patojen etkileşimi, dayanıklılıkta rol oynayan genler, yerel ve yabani çeşitlerde R. commune dayanıklılığı ve ülkemizde R.commune konukçu dayanıklılığı üzerine geçmişten günümüze yapılan çalışmalar özetlenmiştir.

Etik Beyan

Makale araştırma ve yayın etiğine uygun olarak hazırlanmıştır ve etik kurul izni gerekmemektedir.

Kaynakça

  • Abbott, D.C., Brown, A.H.D. and Burdon, J.J. 1992. Genes for scald-resistance from wild barley (Hordeum vulgare ssp. spontaneum) and their linkage to isozyme markers. Euphytica, 225–231.
  • Abbott, D.C., Lagudah, E.S. and Brown, A.H.D. 1995. Identification of RFLPs flanking a scald resistance gene on barley chromosome 6. The Journal of Heredity, 86: 152–154.
  • Aktaş H. 1984. Spread of leaf spots in barley growing areas in Turkey. Proc. 6th Congr. Un. Phytopath. Mediterr. Cairo, Egypt. 338-441.
  • Avrova, A. and Knogge, W. 2012. Rhynchosporium commune: a persistent threat to barley cultivation. Molecular Plant Pathology, 13: 986–997.
  • Ayesu-Offei, E. and Clare, B. 1970. Processes in the infection of barley leaves by Rhynchosporium secalis. Australian Journal of Biological Sciences, 23: 300–308.
  • Azamparsa, M. R. and Karakaya, A. 2020. Determination of the pathotypes of Rhynchosporium commune (Zaffarona, McDonald & Linde) in some regions of Turkey. Plant Protection Bulletin, 60 (3): 5-14.
  • Azamparsa, M. R., Karakaya, A., Ergün, N., Sayim, I., Duran, R. M. and Özbek, K. 2019. Identification of barley landraces and wild barley (Hordeum spontaneum) genotypes resistant to Rhynchosporium commune. Journal of Agricultural Sciences, 25(4): 530-535.
  • Baker, R.J. and Larter, E.N. 1963. The inheritance of scald resistance in barley. Canadian Journal of Genetics and Cytology, 5: 445–449.
  • Barua, U.M., Chalmers, K.J., Hackett, C.A., Thomas, W.T.B., Powell, W. and Waugh, R. 1993. Identification of RAPD markers linked to a Rhynchosporium-secalis resistance locus in barley using near-isogenic lines and bulked segregant analysis. Heredity, 71: 177–184.
  • Bjørnstad, A., Grønnerød, S., Mac Key, J., Tekauz, A., Crossa, J. and Martens, H. 2004. Resistance to barley scald (Rhynchosporium secalis) in the Ethiopian donor lines ‘Steudelli’ and ‘Jet’, analyzed by partial least squares regression and interval mapping. Hereditas, 141(2): 166-179.
  • Bjørnstad, A., Patil, V., Tekauz, A., Maroy, G., Skinnes, H. ve Jensen, A., Magnus, H. and Mackey, J. 2002. Resistance to scald (Rhynchosporium secalis) in barley (Hordeum vulgare) studied by near-isogenic lines: I. Markers and differential isolates. Phytopathology, 92: 710–720.
  • Bockelman, H.E., Sharp, E.L. and Eslick, R.F. 1977. Trisomic analysis of genes for resistance to scald and net blotch in several barley cultivars. Canadian Journal of Botany, 55: 2142–2148.
  • Bouajila, A., Abang, M.M., Haouas, S., Udupa, S., Rezgui, S. and Baum, M. 2007. Genetic diversity of Rhynchosporium secalis in Tunisia as revealed by pathotype, AFLP, and microsatellite analyses. Mycopathologia, 163: 281–294.
  • Bouajila, A., Zoghlami, N., Ghorbel, A., Rezgui, S. and Yahyaoui, A. 2010. Pathotype and microsatellite analyses reveal new sources of resistance to barley scald in Tunisia. FEMS Microbiology Letters, 305: 35–41.
  • Boyd, L.A., Ridout, C., O'Sullivan, D.M., Leach, J.E. and Leung, H. 2013. Plant–pathogen interactions: disease resistance in modern agriculture. Trends in Genetics, 29: 233–240.
  • Brunner, P.C., Schurch, S. and McDonald, B.A. 2007. The origin and colonization history of the barley scald pathogen Rhynchosporium secalis. Journal of Evolutionary Biology, 20: 1311–1321.
  • Brunner, P.C., Stefansson, T.S., Fountaine, J., Richina, V. and McDonald, B.A. 2015. A global analysis of CYP51 diversity and azole sensitivity in Rhynchosporium commune. Phytopathology, 106: 355–361.
  • Büttner, B. Draba, V. Pillen, K. Schweizer, G. and Maurer, A. 2020. Identification of QTLs conferring resistance to scald (Rhynchosporium commune) in the barley nested association mapping population HEB-25. BMC Genom, 21: 1–12.
  • Chelkowski , J., Tyrka, M. and Sobkiewicz, A. 2003. Resistance genes in barley (Hordeum vulgare L.) and their identification with molecular markers. Journal of Applied Genetics, 44(3): 291-310.
  • Clare, S. J., Çelik Oğuz, A., Effertz, K., Karakaya, A., Azamparsa, M. R. and Brueggeman, R. S. 2023. Wild barley (Hordeum spontaneum) and landraces (Hordeum vulgare) from Turkey contain an abundance of novel Rhynchosporium commune resistance loci. Theoretical and Applied Genetics, 136(1): 1-14.
  • Clare, S. J., Wyatt, N. A., Brueggeman, R. S. and Friesen, T. L. 2020. Research advances in the Pyrenophora teres–barley interaction. Molecular plant pathology, 21(2): 272-288.
  • Cooke, L.R., Locke, T., Lockley, K.D., Phillips, A.N., Sadiq, M.D.S., Coll, R., Black, L., Taggart, P.J. and Mercer, P.C. 2004. The effect of fungicide programmes based on epoxiconazole on the control and DMI sensitivity of Rhynchosporium secalis in winter barley. Crop Protection, 23: 393–406.
  • Cooper, M., Messina, C.D., Podlich, D., Totir, L.R., Baumgarten, A., Hausmann, N.J., Wright, D. and Graham, G. 2014. Predicting the future of plant breeding: complementing empirical evaluation with genetic prediction. Crop and Pasture Science, 65: 311–336.
  • Cope, J.E., Norton, J., George, G.T.S. and Newton, A.C. 2021. Identifying potential novel resistance to the foliar disease ‘Scald’(Rhynchosporium commune) in a population of Scottish Bere barley landrace (Hordeum vulgare L.). Journal of Plant Diseases and Protection, 128: 999–1012.
  • Coulter, M., Büttner, B., Hofmann, K., Bayer, M., Ramsay, L., Schweizer, G., Waugh, R., Looseley, M. E. and Avrova. 2019. Characterisation of barley resistance to Rhynchosporium on chromosome 6HS. Theoretical and Applied Genetics, 132: 1089–1107.
  • Crous, P. W., Braun, U., McDonald, B. A., Lennox, C. L., Edwards, J., Mann, R. C. and Groenewald, J. Z. 2021. Redefining genera of cereal pathogens: Oculimacula, Rhynchosporium and Spermospora. Fungal systematics and evolution, 7(1): 67-98.
  • Çelik Oğuz, A., Ölmez, F., Karakaya, A. and Azamparsa, M. R. 2021. Genetic variation and mating type distribution of Rhynchosporium commune in Turkey. Physiological and Molecular Plant Pathology, 114: 101614.
  • Daba, S.D., Horsley, R., Brueggeman, R., Chao, S. and Mohammadi, M. 2019. Genome-wide association studies and candidate gene identification for leaf scald and net blotch in barley (Hordeum vulgare L.). Plant Disease, 103: 880–889.
  • Damgacı, E. 1981. Orta Anadolu bölgesi arpa ekilişlerinde Rhynchosporium yaprak lekesi (R. secalis (Oud.) J. J. Davis) hastalığı üzerine araştırmalar. Zirai Mücadele Araştırma Yıllığı, 101-102.
  • de los Campos, G., Hickey, J.M., Pong-Wong, R., Daetwyler, H.D. and Calus, M.P.L. 2013. Whole genome regression and prediction methods applied to plant and animal breeding. Genetics, 193: 327–345.
  • Desta, Z.A. and Ortiz, R. 2014. Genomic selection: genome-wide prediction in plant improvement. Trends in Plant Science, 19: 592–601.
  • Döken, M. T. 1979. Erzurum'da arpadan izole edilen Rhynchosporium secalis (Oudem.) J. J. Davis'in morfolojisi, biyolojisi, zarar durumu ve savaş yöntemleri üzerinde araştırmalar. Doçentlik Tezi. Atatürk Üniv. Zir. Fak. Bitki Koruma Bölümü, Erzurum.
  • Düşünceli, F., Çetin, L., Albustan, S., Mert, Z., Akan, K. and Karakaya, A. 2008. Determination of the reactions of some barley cultivars and genotypes to scald under greenhouse and field conditions. Tarım Bilimleri Dergisi, 14 (1): 46-50.
  • Dyck, P.L. and Schaller, C.W. 1961. Inheritance of resistance in barley to several physiologic races of the scald fungus. Canadian Journal of Genetics and Cytology, 3, 153–164.
  • Garvin, D.F., Brown, A.H.D., Raman, H. and Read, B.J. 2000. Genetic mapping of the barley Rrs14 scald resistance gene with RFLP, isozyme and seed storage protein markers. Plant Breeding, 119: 193–196.
  • Genger, R.K. Williams, K.J., Raman, H., Read, B.J., Wallwork, H., Burdon, J.J. and Brown, A. H. D. 2003b. Leaf scald resistance genes in Hordeum vulgare and Hordeum vulgare ssp spontaneum: parallels between cultivated and wild barley. Australian Journal of Agricultural Research, 54: 1335–1342.
  • Genger, R.K., Brown, A.H.D., Knogge, W., Nesbitt, K. and Burdon, J.J. 2003a. Development of SCAR markers linked to a scald resistance gene derived from wild barley. Euphytica, 134: 149–159.
  • Genger, R.K., Nesbitt, K., Brown, A.H.D., Abbott, D.C. and Burdon, J.J. 2005. A novel barley scald resistance gene: genetic mapping of the Rrs15 scald resistance gene derived from wild barley, Hordeum vulgare ssp. spontaneum. Plant Breeding, 124: 137–141.
  • Göbelez, M. 1964. La mycoflore de Turque II. Mycopathologia Applicata, 23 (1): 47-67.
  • Gyawali, S. 2018. Genome wide association studies (GWAS) of spot blotch resistance at the seedling and the adult plant stages in a collection of spring barley. Molecular Breeding, 38.
  • Habgood, R.M. and Hayes, J.D. 1971. The inheritance of resistance to Rhynchosporium secalis in barley. Heredity, 27: 25–37.
  • Habier, D., Fernando, R.L. and Garrick, D.J. 2013. Genomic BLUP decoded: a look into the black box of genomic prediction. Genetics, 194: 597–607.
  • Hahn, M., Jungling, S. and Knogge, W. 1993. Cultivar-specific elicitation of barley defense reactions by the phytotoxic peptide Nip1 from Rhynchosporium secalis. Molecular Plant-Microbe Interactions, 6: 745–754.
  • Hanemann, A., Schweizer, G.F., Cossu, R., Wicker, T. and Roder, M.S. 2009. Fine mapping, physical mapping and development of diagnostic markers for the Rrs2 scald resistance gene in barley. Theoretical and Applied Genetics, 119: 1507–1522.
  • Hansen, L.R. and Magnus, H.A. 1973. Virulence spectrum of Rhynchosporium secalis in Norway and sources of resistance in barley. Journal of Phytopathology, 76: 303–313.
  • Hawkins, N.J., Cools, H.J., Sierotzki, H., Shaw, M.W., Knogge, W. Kelly, S.L., Kelly, D.E. and Fraaije, B. A. 2014. Paralog re-emergence: a novel, historically contingent mechanism in the evolution of antimicrobial resistance. Molecular Biology and Evolution, 31: 1793–1802.
  • Heffner, E.L., Jannink, J.-L. and Sorrells, M.E. 2011. Genomic selection accuracy using multifamily prediction models in a wheat breeding program. The Plant Genome, 4: 65–75.
  • Hekimhan, H., Büyük, O., Ünal F., Araz, A., Yorgancılar, A., Özkeskin, M. E., Torun, A., Yüksel, S., Çelik, E. ve Kaymak, S. 2021. Tarla koşullarında suni inokulasyon ile bazı arpa genotiplerinin Rhynchosporium commune (Zaffarano, Mc Donalds&Linde) arpa yaprak yanıklığı hastalığına karşı reaksiyonlarının belirlenmesi. Anadolu Ege Tarımsal Araştırma Enstitüsü Dergisi, 31(1): 47-60.
  • Hofmann, K. 2015. Phenotypic assessment and genetic mapping of genes conferring resistance to leaf scald (Rhynchosporium commune) in barley (Hordeum vulgare).http://geb.unigiessen.de/geb/volltexte/2015/11816/.
  • Hofmann, K., Silvar, C., Casas, A.M., Herz, M., Buttner, B. and Gracia, M.P. 2013. Fine mapping of the Rrs1 resistance locus against scald in two large populations derived from Spanish barley landraces. Theoretical and Applied Genetics, 126: 3091–3102.
  • Johnson, A.G. and Mackie, W.W. 1920. Evidence of disease resistance in barley to attacks of Rhynchosporium. Phytopathology, 10: 54.
  • Jørgensen, L. Neergaard, D. and Smedegaard-Petersen, V. 1993. Histological examination of the interaction between Rhynchosporium secalis and susceptible and resistant cultivars of barley. Physiological and Molecular Plant Pathology, 42: 345–358.
  • Karakaya, A., Mert, Z., Oguz, A.Ç., Azamparsa, M.R., Çelik, E., Akan, K. and Çetin, L. 2014. Current status of scald and net blotch diseases of barley in Turkey. pp 31. In: 1st International Workshop On Barley Leaf Diseases, Salsomaggiore Terme.03-06 June. Italy.
  • Kavak, H. 1998. Şanlıurfa yöresinde ekimi yapılan bazı arpa çeşitlerinin arpa yaprak lekesine (Rhynchosporium secalis (Oudem.) J.J. Davis) karşı reaksiyonları ve hastalık şiddeti ile verim arasındaki ilişkinin belirlenmesi. Doktora tezi. Gaziosmanpaşa Üniversitesi, Fen Bilimleri Enstitüsü Bitki Koruma Ana Bilim Dalı. Tokat.
  • Kiros-Meles, A., Gomez, D., McDonald, B.A., Yahyaoui, A. and Linde, C.C. 2011. Invasion of Rhynchosporium commune onto wild barley in the Middle East. Biological Invasions, 13: 321–330.
  • Kirsten, S., Navarro-Quezada, A., Penselin, D., Wenzel, C., Matern, A.ve Leitner, A., Baum, T., Seiffert, U. and Knogge, W. 2012. Necrosis-inducing proteins of Rhynchosporium commune, effectors in quantitative disease resistance. Molecular Plant-Microbe Interactions, 25: 1314–1325.
  • Korte, A. and Farlow, A. 2013. The advantages and limitations of trait analysis with GWAS: a review. Plant Methods, 9: 29–29.
  • Kün, E. 1996. Tahıllar-1 (Serin İklim Tahılları). Ankara Üniversitesi Ziraat Fakültesi Yayınları, Yayın No: 1451. Ankara.
  • Lehnackers, H. and Knogge, W. 1990 Cytological studies on the infection of barley cultivars with known resistance genotypes by Rhynchosporium secalis. Canadian Journal of Botany, 68: 1953–1961.
  • Linde, C.C., Zala, M. and McDonald, B.A. 2009. Molecular evidence for recent founder populations and human-mediated migration in the barley scald pathogen Rhynchosporium secalis. Molecular Phylogenetics and Evolution, 51: 454–464.
  • Linde, C.C., Smith, L. M. and Peakall, R. 2016. Weeds, as ancillary hosts, pose disproportionate risk for virulent pathogen transfer to crops. BMC Evolutionary Biology, 16:101.
  • Locke, T. and Phillips, A. 1995. The occurrence of carbendazim resistance in Rhynchosporium secalis on winter barley in England and Wales in 1992 and 1993. Plant Pathology, 44: 294–300.
  • Looseley, M. E., Newton, A. C., Atkins, S. D., Fitt, B. D., Fraaije, B. A., Thomas, W. T. B. and Harrap, D. 2012. Genetic basis of control of Rhynchosporium secalis infection and symptom expression in barley. Euphytica, 184: 47-56.
  • Looseley, M.E., Griffe, L.L., Büttner, B., Wright, K.M., Bayer, M.M., Coulter, M., Thauvin, J.N., Middlefell-Williams, J.,Maluk, M., Okpo, A., Kettles, N., Werner, P., Byrne, E. and Avrova, A. 2020. Characterisation of barley landraces from Syria and Jordan for resistance to Rhynchosporium and identification of diagnostic markers for Rrs1Rh4. Theoretical and Applied Genetics, 133: 1243–1264.
  • Looseley, M.E., Griffe, L.L., Büttner, B., Wright, K.M., Middlefell-Williams, J., Bull, H. Shaw, P.D., Macaulay, M., Booth, A., Schweizer,G., Russell, J.R., Waugh, R., Thomas W.T.B. and Avrova, A. 2018. Resistance to Rhynchosporium commune in a collection of European spring barley germplasm. Theoretical and Applied Genetics, 131: 2513–2528.
  • Lorenz, A.J., Chao, S., Asoro, F.G., Heffner, E.L., Hayashi, T., Iwata, H. Smith, K.P., Sorrells, M. E. and Jannink, J. L. 2011. Genomic selection in plant breeding: knowledge and prospects. Advances in Agronomy, 110: 77–123.
  • Lorenz, A.J., Smith, K.P. and Jannink, J.-L. 2012. Potential and optimization of genomic selection for fusarium head blight resistance in sixrow barley. Crop Science, 52:1609–1621.
  • Mamluk, O. F., Çetin, L., Braun, H. J., Bolat, N., Bertschinger, L., Makkouk, K. M., Yıldırım, A. F., Saari, E., Zencirci, E., Albustan, N., Çalı, S., Beniwal, S. P., and Düşünceli., F. 1997. Current status of wheat and barley diseases in the Central Anatolian Plateau of Turkey. Phytopathol. Med, 36: 167–81.
  • Mathre, D.E. 1982. Compendium of barley diseases. Aps Press.
  • McDonald, B.A. 2015. How can research on pathogen population biology suggest disease management strategies? The example of barley scald (Rhynchosporium commune). Plant Pathology, 64: 1005–1013.
  • McDonald, B.A., Zhan, J. and Burdon, J.J. 1999. Genetic structure of Rhynchosporium secalis in Australia. Phytopathology, 89: 639–645.
  • McLean, M.S. and Hollaway, G.J. 2018. Suppression of scald and improvements in grain yield and quality of barley in response to fungicides and host-plant resistance. Australasian Plant Pathology, 47: 13–21.
  • Mert, Z. and Karakaya, A. 2004. Assessment of the seedling reactions of Turkish barley cultivars to scald. Journal of Phytopathology, 152: 190-192.
  • Mert, Z., Karakaya A., Çelik Oğuz, A., Azamparsa M.R., Ergün N. and Sayim, İ. 2014. Field Evaluation of Some Turkish Barley Landraces to Scald and Net Blotch of Barley. IWBLD – 1st International Workshop on Barley Leaf Diseases, 64-64.
  • Meuwissen, T.H.E., Hayes, B.J. and Goddard, M.E. 2001. Prediction of total genetic value using genome-wide dense marker maps. Genetics, 157: 1819–1829.
  • Mohd-Assaad, N., McDonald, B.A. and Croll, D. 2016. Multilocus resistance evolution to azole fungicides in fungal plant pathogen populations. Molecular Ecology, 25: 6124–6142.
  • Mohd-Assaad, N., McDonald, B.A. and Croll, D. 2019. The emergence of the multi-species NIP1 effector in Rhynchosporium was accompanied by high rates of gene duplications and losses. Environmental Microbiology, 21: 2677–2695.
  • Novakazi, F., Göransson, M., Stefánsson, T.S., Jalli, M. and Hallsson, J. H. 2021 Virulence of Rhynchosporium commune isolates collected in Iceland. Journal of Plant Pathology, 103: 935–942.
  • Özdemir, H. Y., Karakaya, A. ve Çelik Oğuz, A. 2017. Kırıkkale ilinde buğday ve arpa ekim alanlarında görülen fungal yaprak hastalıklarının belirlenmesi. Bitki Koruma Bülteni, 57(2): 89-112.
  • Penselin, D., Münsterkötter, M., Kirsten, S., Felder, M., Taudien, S., Platzer, M., Ashelford, K., Paskiewicz, K. H., Harrison, R. J., Hughes, D. J., Wolf, T., Shelest, E., Graap, J., Hoffmann, J., Wenzel, C., Wöltje, N., King, K. M., Fitt, B. D. L., Güldener, U., Avrova, A. and Knogge, W. 2016. Comparative genomics to explore phylogenetic relationship, cryptic sexual potential and host specificity of Rhynchosporium species on grasses. BMC Genomics, 17: 953.
  • Pickering, R., Ruge-Wehling, B., Johnston, P.A., Schweizer, G., Ackermann, P. and Wehling, P. 2006. The transfer of a gene conferring resistance to scald (Rhynchosporium secalis) from Hordeum bulbosum into H. vulgare chromosome 4HS. Plant Breeding, 125: 576–579.
  • Ponce-Molina, L.J. 2012. Quantitative trait loci and candidate loci for heading date in a large population of a wide barley cross, Crop Science, 52: 2469–2480.
  • Read, B.J., Luckett, D.J., Smithard, R.A. and Brown, A.H.D. 1998. Register of Australian winter cereal cultivars Hordeum vulgare cv. Tantangara. Australian Journal of Experimental Agriculture, 38: 207–207.
  • Read, B.J., Raman, H., McMichael, G., Chalmers, K.J., Ablett, G.A.ve Platz, G.J. Raman, R., Genger, R.K., Boyd, W.J.R., Li, C.D., Grime, C.R., Park, R.F., Wallwork, H., Prangnell, R. and Lance, R.C.M. 2003. Mapping and QTL analysis of the barley population Sloop × Halcyon. Australian Journal of Agricultural Research, 54: 1145–1153.
  • Rehman, S., Amouzoune, M., Hiddar, H., Aberkane, H., Benkirane, R., Filali‐Maltouf, A. and Amri, A. 2021. Traits discovery in Hordeum vulgare sbsp. spontaneum accessions and in lines derived from interspecific crosses with wild Hordeum species for enhancing barley breeding efforts. Crop Science, 61(1): 219-233.
  • Richards, J., Chao, S., Friesen, T. and Brueggeman, R. 2016. Fine mapping of the barley chromosome 6H net form net blotch susceptibility locus. G3 Genes Genomes Genetics, 6: 1809–181.
  • Riddle O.C. and Suneson C.A. 1948. Sources and use of scald resistance in barley, J. Am. Soc. Agron, 40. Riddle, O.C. and Briggs F.N. 1950. Inheritance of resistance to scald in barley, Hilgardia, 20: 19–27.
  • Robbertse, B., van der Rijst, M., van Aarde, I.M.R., Lennox, C. and Crous, P.W. 2001. DMI sensitivity and cross-resistance patterns of Rhynchosporium secalis isolates from South Africa. Crop Protection, 20: 97–102.
  • Rohe, M., Gierlich, A., Hermann, H., Hahn, M., Schmidt, B.ve Rosahl, S. and Knogge, W. 1995. The race-specific elicitor, NIP1, from the barley pathogen, Rhynchosporium secalis, determines avirulence on host plants of the Rrs1 resistance genotype. The EMBO Journal, 14: 4168–4177.
  • Sallam, A.H., Endelman, J.B., Jannink, J.-L. and Smith, K.P. 2015. Assessing genomic selection prediction accuracy in a dynamic barley breeding population. The Plant Genome, 8: 1–15.
  • Sayed, H. and Baum, M. 2018. Marker-assisted selection for scald (Rhynchosporium commune L.) resistance gene (s) in barley breeding for dry areas. Journal of Plant Protection Research, 58.
  • Schurch, S., Linde, C.C., Knogge, W., Jackson, L.F. and McDonald, B.A. 2004. Molecular population genetic analysis differentiates two virulence mechanisms of the fungal avirulence gene NIP1. Molecular Plant-Microbe Interactions, 17: 1114–1125.
  • Schürch, S., Linde, C.C., Knogge, W., Jackson, L.F. and McDonald, B.A. 2004. Molecular population genetic analysis differentiates two virulence mechanisms of the fungal avirulence gene NIP1. Molecular Plant–Microbe Interactions, 17: 1114–1125.
  • Seifollahi, E., Shariifnabi, B., Javan-Nikkhah, M. and Linde, C.C. 2018. Low genetic diversity of Rhynchosporium commune in Iran, a secondary centre of barley origin. Plant Pathology, 67:1725–1734.
  • Shipton, W.A., Boyd, W.J.R. and Ali, S.M. 1974. Scald of barley. Review of Plant Pathology, 53: 839–861.
  • Shoaib, A., Aldaoude A., Arabi M.I.E., Al-Shehadah E. and Jawhar M. 2018. Transcriptome profiling reveals distinct gene activations in barley responding to scald and spot blotch. Cereal Research Communications, 46: 490–498.
  • Siersleben, S., Penselin, D., Wenzel, C., Albert, S. and Knogge, W. 2014. PFP1, a gene encoding an Epc-N domain-containing protein, is essential for pathogenicity of the barley pathogen Rhynchosporium commune. Eukaryotic Cell, 13: 1026–1035.
  • Silvar, C., Casas, A. M., Kopahnke, D., Habekuß, A., Schweizer, G., Gracia, M. P., Lasa, J. M., Ciudad, F. J., Molina-Cano, J. L., Igartua, E. and Ordon, F. 2010. Screening the Spanish barley core collection for disease resistance. Plant Breeding, 129; 45–52,
  • Stefansson, T.S., Serenius, M. and Hallsson, J.H. 2012. The genetic diversity of Icelandic populations of two barley leaf pathogens, Rhynchosporium commune and Pyrenophora teres. European Journal of Plant Pathology, 134: 167–180.
  • Stefansson, T.S., Willi, Y., Croll, D. and McDonald, B.A. 2014. An assay for quantitative virulence in Rhynchosporium commune reveals an association between effector genotype and virulence. Plant Pathology, 63: 405–414.
  • Steiner-Lange, S., Fischer, A., Boettcher, A., Rouhara, I., Liedgens, H., Schmelzer, E. and Knogge, W. 2003. Differential defense reactions in leaf tissues of barley in response to infection by Rhynchosporium secalis and to treatment with a fungal avirulence gene product. Molecular Plant Microbe Interactions, 16: 893–902.
  • Taş, B. ve Yürür, N. 2002. Bursa ekolojik koşullarında bazı yabancı iki sıralı arpa (Hordeum vulgare distichon) çeşitlerinin kimi verim ve kalite özelliklerinin incelenmesi. Bursa Uludag Üniv. Ziraat Fak. Derg. 16 (1): 117-127.
  • Thirugnanasambandam, A., Wright, K.M., Atkins, S.D., Whisson, S.C. and Newton, A.C. 2011. Infection of Rrs1 barley by an incompatible race of the fungus Rhynchosporium secalis expressing the green fluorescent protein. Plant Pathology, 60: 513–521.
  • Topp, C.F.E., Hughes, G., Nevison, I.M., Butler, A., Oxley, S.J.P. and Havis, N.D. 2019. Rhynchosporium leaf scald disease incidence: seed source and spatial pattern. Plant Pathology, 68: 1179–1187.
  • Van Leur, J.A.G., Ceccarelli, S. and Grando, S. 1989. Diversity for disease resistance in barley landraces from Syria and Jordan. Plant Breeding, 103: 324–335.
  • Von Korff, M., Wang, H., Léon, J. and Pillen, K. 2005. AB-QTL analysis in spring barley. I. Detection of resistance genes against powdery mildew, leaf rust and scald introgressed from wild barley. Theoretical and Applied Genetics, 111: 583–590.
  • Walters, D. R., Avrova, A., Bingham, I. J., Burnett, F. J., Fountaine, J., Havis, N. D., Hoad, S.P., Hughes, G., Looseley, M., Oxley, S.J.P., Renwick, A., Topp, C.F.E. and Newton, A.C. 2012. Control of foliar diseases in barley: towards an integrated approach. European Journal of Plant Pathology, 133: 33-73.
  • Wang, Y., Gupta, S., Wallwork, H., Zhang, X.-Q., Zhou, G., Broughton, S., Loughman, R., Lance, R., Wu, D., Shu, X. and Li, C. 2014. Combination of seedling and adult plant resistance to leaf scald for stable resistance in barley. Molecular Breeding, 34: 2081–2089.
  • Wevelsiep, L., Rupping, E. and Knogge, W. 1993. Stimulation of barley plasmalemma H+-ATPase by phytotoxic peptides from the fungal pathogen Rhynchosporium secalis. Plant Physiology, 101: 297–301.
  • Xue, G. and Hall, R. 1991. Components of parasitic fitness in Rhynchosporium secalis and quantitative resistance to scald in barley as determined with a dome inoculation chamber. Canadian Journal of Plant Pathology, 13: 19–25.
  • Yitbarek, S. 1998. Variation in Ethiopian barley landrace populations for resistance to barley leaf scald and netblotch. Plant Breeding, 117: 419–423.
  • Zaffarano P.L., McDonald B.A. and Linde C.C. 2009. Phylogeographical analyses reveal global migration patterns of the barley scald pathogen Rhynchosporium secalis. Molecular Ecology, 18.
  • Zaffarano, P.L., McDonald, B.A. and Linde, C.C. 2011. Two new species of Rhynchosporium. Mycologia, 103: 195–202.
  • Zaffarano, P.L., McDonald, B.A., Zala, M. and Linde, C.C. 2006. Global hierarchical gene diversity analysis suggests the Fertile Crescent is not the center of origin of the barley scald pathogen Rhynchosporium secalis. Phytopathology, 96: 941–950.
  • Zantinge, J., Xue, S., Holtz, M., Xi, K. and Juskiw, P. 2019. The identifcation of multiple SNP markers for scald resistance in spring barley through restriction-site associated sequencing. Euphytica, 215: 8.
  • Zencirci, N. and Hayes, P. M. 1990. Effect of scald (Rhynchosporium secalis) on yield components of twelve winter barley genotypes. Journal of Turkish Phytopathology, 82: 798-803.
  • Zhan, J., Fitt, B.D.L., Pinnschmidt, H.O., Oxley, S.J.P. and Newton, A.C. 2008. Resistance, epidemiology and sustainable management of Rhynchosporium secalis populations on barley. Plant Pathology, 57: 1–14.
  • Zhan, J., Linde, C.C., Jürgens, T., Merz, U., Steinebrunner, F. and McDonald, B.A. 2005. Variation for neutral markers is correlated with variation for quantitative traits in the plant pathogenic fungus Mycosphaerella graminicola. Molecular Ecology, 14: 2683–2693.
  • Zhang X., Ovenden, B. and Milgate, A. 2020. Recent insights into barley and Rhynchosporium commune interactions. Molecular Plant Pathology, 21: 1111–1128.
  • Zhang, Q., Webster, R.K., Crandall, B.A., Jackson, L.F. and Saghai Maroof, M.A. 1992. Race composition and pathogenicity associations of Rhynchosporium secalis in California. Phytopathology, 82: 798–803.
  • Zhang, X. 2019. Bivariate analysis of barley scald resistance with relative maturity reveals a new major QTL on chromosome 3H. Scientific Reports, 9: 1–11.
  • Zhang, X., Shabala, S., Koutoulis, A., Shabala, L. and Zhou, M. 2017. Meta-analysis of major QTL for abiotic stress tolerance in barley and implications for barley breeding. Planta, 245: 283–295.
  • Zhu, C., Gore, M., Buckler, E.S. and Yu, J. 2008. Status and prospects of association mapping in plants. The Plant Genome, 1: 5–20.
Toplam 123 adet kaynakça vardır.

Ayrıntılar

Birincil Dil Türkçe
Konular Fitopatoloji
Bölüm Derleme
Yazarlar

Şükriye Yıldırım 0009-0007-2169-9729

Arzu Çelik Oğuz 0000-0002-0906-6407

Erken Görünüm Tarihi 11 Haziran 2024
Yayımlanma Tarihi 14 Haziran 2024
Gönderilme Tarihi 1 Eylül 2023
Yayımlandığı Sayı Yıl 2024 Cilt: 38 Sayı: 1

Kaynak Göster

APA Yıldırım, Ş., & Çelik Oğuz, A. (2024). Rhynchosporium commune’ye Karşı Konukçu Dayanıklılığı. Bursa Uludağ Üniversitesi Ziraat Fakültesi Dergisi, 38(1), 221-241. https://doi.org/10.20479/bursauludagziraat.1353738

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Tüm bilim dallarında yapılan, ve etik kurul kararı gerektiren klinik ve deneysel insan ve hayvanlar üzerindeki çalışmalar için ayrı ayrı etik kurul onayı alınmış olmalı, bu onay makalede belirtilmeli ve belgelendirilmelidir.
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Kullanılan fikir ve sanat eserleri için telif hakları düzenlemelerine riayet edilmesi gerekmektedir.
Makale sonunda; Araştırmacıların Katkı Oranı beyanı, varsa Destek ve Teşekkür Beyanı, Çatışma Beyanı verilmesi.
Etik Kurul izni gerektiren araştırmalar aşağıdaki gibidir.
- Anket, mülakat, odak grup çalışması, gözlem, deney, görüşme teknikleri kullanılarak katılımcılardan veri toplanmasını gerektiren nitel ya da nicel yaklaşımlarla yürütülen her türlü araştırmalar
- İnsan ve hayvanların (materyal/veriler dahil) deneysel ya da diğer bilimsel amaçlarla kullanılması,
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Ayrıca;
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(5) Araştırmacıların Katkı Oranı beyanı, Çıkar Çatışması beyanı verilmesi Makale sonunda; Araştırmacıların Katkı Oranı beyanı, varsa Destek ve Teşekkür Beyanı, Çatışma Beyanı verilmesi ve sisteme belgenin (Tüm yazarlar tarafından imzalanmış bir yazı) yüklenmesi gerekmektedir.

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