Yeni Küçük Kodlamayan RNA Sınıfı: tiRNA
Yıl 2023,
Cilt: 10 Sayı: 1, 60 - 66, 31.03.2023
Deniz Özdemir
,
Can Ali Agca
Öz
Küçük kodlamayan RNA'lar, kanser gelişimi, tanı ve tedavisinde, işlevleri nedeniyle her geçen gün daha da önem kazanmaktadır. Hücresel stres sırasında anjiyogenin aracılı olgun tRNA’nın ayrılması ile tiRNA yapıları meydana gelmektedir. tiRNA'lar antikodon kesim bölgesini barındırıp barındırmadığına bağlı olarak 3' ve 5' tiRNA'lar olarak sınıflandırılmaktadır. tRNAlar hücre stres yanıtına katkıda bulunmakta ve başta kanser olmak üzere çeşitli insan hastalıklarının gelişiminde etkin roller oynamaktadır. tiRNA fonksiyonlarının derinlemesine çalışılması ile yeni yaklaşımların keşfedilmesi ve potansiyel terapotik biyobelirteçlerin hedeflenmesi öngörülmektedir. Bu yeni küçük kodlamayan RNA sınıfının sınıflandırmasını, biyogenezisini ve biyolojik rolünü kanseri tedavi etmek için yeni terapötik hedefler sağlayabileceği tahmin edilmektedir.
Destekleyen Kurum
Bingöl Üniversitesi
Teşekkür
Yazarlar, Bingöl Üniversitesi'ne teşekkür eder.
Kaynakça
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- Litwack, G, Protein Biosynthesis in Human Biochemistry, GLitwack (Ed) Academic Press: Boston, 2018; pp 319–336.
- Adams, B.D, Parsons, C, Walker, L, Zhang, W.C, Slack, F.J, Targeting noncoding RNAs in disease, The Journal of Clinical Investigation, 2017, 127(3), 761–771.
- Rupaimoole, R, Slack, F.J, MicroRNA therapeutics: towards a new era for the management of cancer and other diseases, Nature Revivews Drug Discovery, 2017, 16(3), 203–222.
- McGuire, A.L, Gabriel, S, Tishkoff, S.A, Wonkam, A, Chakravarti, A, Furlong, E.E.M, et al., The road ahead in genetics and genomics, Nature Reviews Genetics, 2020, 21(10), 581–596,
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- Turowski, T.W, Tollervey, D, Transcription by RNA polymerase III: insights into mechanism and regulation, Biochemical Society Transactions, 2016, 44(5), 1367–1375.
- Weiner, A.M, tRNA maturation: RNA polymerization without a nucleic acid template, Current Biology, 2004, 14(20), 883–885.
- Powell, C.A, Nicholls, T.J, Minczuk, M, Nuclear-encoded factors involved in post-transcriptional processing and modification of mitochondrial tRNAs in human disease, Frontiers in Genetics, 2015, 6, 79.
- Tuorto, F, Liebers, R, Musch, T, Schaefer, M, Hofmann, S, Kellner, S, etal., F, RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis, Nature Structural & Molecular Biology, 2012, 19(9), 900–905.
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- Skorupa, A, King, M.A, Aparicio, I.M, Dussmann, H, Coughlan, K, Breen, B, Prehn, J.H, Motoneurons secrete angiogenin to induce RNA cleavage in astroglia, Journal of Neuroscience, 2012, 32(15), 5024–5038.
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New Class of Small Non-coding RNAs: tiRNA
Yıl 2023,
Cilt: 10 Sayı: 1, 60 - 66, 31.03.2023
Deniz Özdemir
,
Can Ali Agca
Öz
Small non-coding RNAs are gaining more and more importance in cancer development, diagnosis and treatment because of their functions. During cellular stress, tiRNA structures are formed by angiogenin-mediated cleavage of mature tRNA.tiRNAs are classified as 3' and 5' tiRNAs depending on whether they contain the anticodon cleavage site.tRNAs contribute to the cell stress response and play an active role in the development of various human diseases, especially cancer. Exploring new approaches with in-depth study of tiRNA functions and targeting potential therapeutic biomarkers are envisaged.It is predicted that this new class of small non-coding RNA may provide new therapeutic targets to treat cancer in its classification, biogenesis and biological role.
Kaynakça
- Higgs, N, Lehman, P.G, The RNA World: Molecular cooperation at the origins of life, Nature Revivews Genetics, 2015, 16(1), 7–17.
- Litwack, G, Protein Biosynthesis in Human Biochemistry, GLitwack (Ed) Academic Press: Boston, 2018; pp 319–336.
- Adams, B.D, Parsons, C, Walker, L, Zhang, W.C, Slack, F.J, Targeting noncoding RNAs in disease, The Journal of Clinical Investigation, 2017, 127(3), 761–771.
- Rupaimoole, R, Slack, F.J, MicroRNA therapeutics: towards a new era for the management of cancer and other diseases, Nature Revivews Drug Discovery, 2017, 16(3), 203–222.
- McGuire, A.L, Gabriel, S, Tishkoff, S.A, Wonkam, A, Chakravarti, A, Furlong, E.E.M, et al., The road ahead in genetics and genomics, Nature Reviews Genetics, 2020, 21(10), 581–596,
- Deveson, I.W, Hardwick, S.A, Mercer, T.R, Mattick, J.S, The dimensions, dynamics, and relevance of the mammalian noncoding transcriptome, Trends in Genetics, 2017, 33(7), 464–478.
- Kopp, F, Mendell, J.T, Functional classification and experimental dissection of long noncoding RNAs, Cell, 2018, 172(3), 393–407.
- Watson, C.N, Antonio, B, Valentina, D.P, Small non-coding RNAs: new class of biomarkers and potential therapeutic targets in neurodegenerative disease, Frontiers in Genetics, 2019, 26(04), 364.
- Ma, L, Bajic, V.B, Zhang, Z, On the classification of long non-coding RNAs, RNA Biology, 2013,10(6), 924-933.
- Dozmorov, M.G, Giles, C.B, Koelsch, K.A, Wren, J.D, Systematic classification of non-coding RNAs by epigenomic similarity, In BMC bioinformatics, 2013, 14(14), 1-12.
- Brien, O, Hayder, J, Zayed, H, Peng, C, Overview of MicroRNA Biogenesis, Mechanisms of Actions, and Circulation, Frontiers Endocrinol, (Lausanne), 2018, 9, 402.
- Dana, H, Chalbatani, G.M, Mahmoodzadeh, H, Karimloo, R, Rezaiean, O, Moradzadeh, et al., Molecular Mechanisms and Biological Functions of siRNA, International Journal Biomedical Science, 2017, 13(2), 48–57.
- Karijolich, J, Yu, Y.T, Spliceosomal snRNA modifications and their function, RNA Biologial, 2010, 7(2), 192–204,
- Liu, Y, Dou, M, Song, X, Dong, Y, Liu, S, Liu, H, et al., The emerging role of the piRNA/piwi complex in cancer, Molecular Cancer, 2019,18(1), 123.
- Li, S, Shi, X, Chen, M, Xu, N, Sun, D, Bai, R, et al., Angiogenin promotes colorectal cancer metastasis via tiRNA production, International Journal of Cancer, 2019, 145(5), 1395–1407.
- Liu, Q.C, Ding, X, Lang, G, Guo, Chen J, Su, X, Small noncoding RNA discovery and profiling with sRNAtools based on high-throughput sequencing, Briefings in Bioinformatics, 2021, 22(1), 463–473.
- Kirchner, S, Ignatova, Z, Emerging roles of tRNA in adaptive translation, signalling dynamics and disease, Nature Reviews Genetics, 2015, 16(2), 98–112.
- Donoghue, P.O, Ling, J, Söll, D, Transfer RNA function and evolution, RNA Biology, 2018, 15(4–5), 423–426.
- Turowski, T.W, Tollervey, D, Transcription by RNA polymerase III: insights into mechanism and regulation, Biochemical Society Transactions, 2016, 44(5), 1367–1375.
- Weiner, A.M, tRNA maturation: RNA polymerization without a nucleic acid template, Current Biology, 2004, 14(20), 883–885.
- Powell, C.A, Nicholls, T.J, Minczuk, M, Nuclear-encoded factors involved in post-transcriptional processing and modification of mitochondrial tRNAs in human disease, Frontiers in Genetics, 2015, 6, 79.
- Tuorto, F, Liebers, R, Musch, T, Schaefer, M, Hofmann, S, Kellner, S, etal., F, RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis, Nature Structural & Molecular Biology, 2012, 19(9), 900–905.
- Lorenz, C, Lünse, C.E, Mörl, M, tRNA Modifications: Impact on Structure and Thermal Adaptation, Biomolecules, 2017, 7(2), 35.
- Yamasaki, S, Nakashima, M, Ida, H, Possible Roles of tRNA Fragments, as New Regulatory ncRNAs, in the Pathogenesis of Rheumatoid Arthritis, International Journal of Molecular Sciences, 2021, 22(17), 9481.
- Zhang, Y, Qian, H, He, J, Gao, W.D, Mechanisms of tRNA-derived fragments and tRNA halves in cancer treatment resistance, Biomarker Research, 2020, 8(1), 1–14.
- Kawaji, H, Nakamura, M, Takahashi, Y, Sandelin, A, Katayama, S, Fukuda, S, et al., Hidden layers of human small RNAs, BMC Genomics, 2008, 9(1), 1–21.
- Mattick, J.S, Challenging the dogma: the hidden layer of non‐protein‐coding RNAs in complex organisms, Bioessays, 2003, 25(10), 930–939.
- Qin, C, Xu, P.P, Zhang, X, Zhang, C, Liu, C.B, Yang, D.G, et al., Pathological significance of tRNA-derived small RNAs in neurological disorders, Neural Regeneration. Research, 2020, 15(2), 212–221.
- Kumar, P, Kuscu, C, Dutta, A, Biogenesis and function of transfer RNA-related fragments (tRFs), Trends in Biochemical Sciences, 2016, 41(8), 679–689.
- Valadkhan, S, Hipólito, A.V, lncRNAs in stress response, Long Non-coding RNAs Human Disease, 2015, 203–236.
- Torrent, M, Chalancon, G, Groot, N.S.D, Wuster, A, Babu, M.M, Cells alter their tRNA abundance to selectively regulate protein synthesis during stress conditions, Sciene Signaling, 2018, 11(546), 6409.
- Tosar, J.P, Cayota, A, Extracellular tRNAs and tRNA-derived fragments, RNA Biology, 2020, 17(8), 1149–1167.
- Imura, Weiss, G.B, Chambers, R.W, Reconstitution of alanine acceptor activity from fragments of yeast tRNAAlaII, Nature, 1969, 222(5199), 1147–1148.
- Zong, T, Yang, Y, Zhao, H, Li, L, Liu, M, Fu, X, et al., tsRNAs: Novel small molecules from cell function and regulatory mechanism to therapeutic targets, Cell Proliferation, 2021, 54(3), 12977.
- Yamasaki, S, Ivanov, P, Hu, G, Anderson, P, Angiogenin cleaves tRNA and promotes stress-induced translational repression, Journal Cell Biology, 2009, 185(1), 35–42.
- Lee, S.R, Collins, K, Starvation induced cleavage of the tRNA anticodon loop in Tetrahymena thermophila, Journal Biolology Chemistry, 2005, 280(52), 42744–42749.
- Haiser, H.J, Karginov, F.V, Hannon, G.J, Elliot, M.A, Developmentally regulated cleavage of tRNAs in the bacterium Streptomyces coelicolor, Nucleic Acids Research, 2008, 36(3), 732–741.
- Jöchl, C, Rederstorff, M, Hertel, J, Stadler, P.F, Hofacker, I.L, Schrettl, M, Hüttenhofer, A, Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis, Nucleic Acids Research, 2008, 36(8), 2677–2689.
- Thompson, D.M, Lu, C, Green, P.J, Parker, R, tRNA cleavage is a conserved response to oxidative stress in eukaryotes, Rna, 2008, 14(10), 2095–2103.
- Su, Z, Kuscu, C, Malik, A, Shibata, E, Dutta, A, Angiogenin generates specific stress-induced tRNA halves and is not involved in tRF-3–mediated gene silencing, Journal of Biological Chemistry, 2019, 294 (45), 16930–16941.
- Han, L, Lai, H, Yang, Y, Hu, J, Li, Z, Ma, B, et al., A5’-tRNA halve, tiRNA-Gly promotes cell proliferation and migration via binding to RBM17 and inducing alternative splicing in papillary thyroid cancer, Journal of Experimental & Clinical Cancer Research, 2021, 40(1), 222.
- Saikia, M, Krokowski, D, Guan, B.J, Ivanov, P, Parisien, M, Hu, et al., Genome-wide identification and quantitative analysis of cleaved tRNA fragments induced by cellular stress, Journal of Biological Chemistry, 2012, 287(51) ,42708–42725.
- Buchan, J.R, Parker, R, Eukaryotic stress granules: the ins and outs of translation, Molecular Cell, 2009, 36(6), 932–941.
- Guzikowski, A.R, Chen, Y.S, and Zid, B.M, Stress‐induced mRNP granules: form and function of processing bodies and stress granules, Wiley Interdisciplinary Reviews RNA, 2019, 10(3), 1524.
- Emara M. M, Ivanov, P, Hickman, T, Dawra, N, Tisdale, S, Kedersha, N, Anderson, P, Angiogenin-induced tRNA-derived stress-induced RNAs promote stress-induced stress granule assembly, Journal of Biological Chemistry, 2010, 285(14), 10959–10968.
- Lyons, S.M, Achorn, C, Kedersha, N.L, Anderson, P.J, Ivanov, P, YB-1 regulates tiRNA-induced Stress Granule formation but not translational repression, Nucleic Acids Research, 2016, 44(14), 6949–6960.
- Ivanov, P, ODay, E, Emara, M.M, Wagner, G, Lieberman, J, Anderson, P, G-quadruplex structures contribute to the neuroprotective effects of angiogenin-induced tRNA fragments, Proceedings of the National Academy of Sciences, 2014, 111(51), 18201–18206.
- Lyons, S.M, Kharel, P, Akiyama, Y, Ojha, S, Dave, D, Tsvetkov, V, et al., eIF4G has intrinsic G-quadruplex binding activity that is required for tiRNA function, Nucleic Acids Research, 2020, 48(11), 6223–6233.
- Skorupa, A, King, M.A, Aparicio, I.M, Dussmann, H, Coughlan, K, Breen, B, Prehn, J.H, Motoneurons secrete angiogenin to induce RNA cleavage in astroglia, Journal of Neuroscience, 2012, 32(15), 5024–5038.
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