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Kuraklık Stresi ve Bitki Proteomiği

Yıl 2020, , 286 - 297, 15.01.2020
https://doi.org/10.17714/gumusfenbil.568384

Öz

Hayatta kalabilmek için bitkilerin stresle sürekli başa çıkmaları
gerekir. Kuraklık bitki büyümesini, gelişimini ve ürün verimliliğini etkileyen
ana abiyotik streslerden biridir. Bitki ıslahı çalışmaları kapsamında, kuraklık
stresine karşı dayanıklı ve yüksek besin değerine sahip tarımsal bitki
türlerinin geliştirilmesi genomik, transkriptomik, proteomik ve metabolomik
gibi “omik” teknolojileri ile sağlanabilecektir. Proteomik, kuraklık stresi
koşullarında bir hücredeki proteinlerin tanımlanması, ifade seviyelerinin
belirlenmesi, translasyon sonrası modifikasyonların ortaya konulması ve
protein-protein etkileşimlerinin anlaşılması için güçlü bir yöntemdir. Farklı
streslere maruz kalan bitkilerde protein ifade seviyesinde önemli değişiklikler
meydana geldiğinden, proteomik yaklaşım stres koşulları altında proteinlerin
stres toleransı ile ilişkisini aydınlatmak için oldukça önemlidir. Kuraklık
stresi genellikle fotosentez, enerji metabolizması, stres savunma, protein
metabolizması ve sinyal iletimi gibi yolaklarda fonksiyon gören proteinlerin
ifade seviyelerinde değişime neden olmaktadır. Bitkilerde proteomik
çalışmalarda fizyolojik ve moleküler sonuçların beraber değerlendirilmesi
kuraklık toleransı için bazı potansiyel proteinler ya da metabolik yolakların keşfedilmesine
olanak tanımaktadır. Bu derlemede, bitkilerin kuraklık stresine vermiş
oldukları protein seviyesindeki tepkiler hakkındaki son bilgiler
tartışılmıştır.

Kaynakça

  • Abreu, I., Farinha, A., Negrao, S., Goncalves, N., Fonseca, C., Rodrigues, M., Batista, R., Saibo, N. ve Oliveira, M., 2013. Coping with abiotic stress, proteome changes for crop improvement. Journal of Proteomics, 93, 145–168.
  • Alam, I., Sharmin, S. A., Kim, K., Yang, J. K., Choi, M. S. ve Lee, B., 2010. Proteome analysis of soybean roots subjected to short-term drought stress. Plant and Soil, 333, 491–505.
  • Babita, M., Maheswari, M., RaoL, M., Shanker, A.K. ve Rao, D.G., 2010. Osmotic adjustment, drought tolerance and yield in castor (Ricinus communis L.) hybrids. Environmental and Experimental Botany, 69, 243–249.
  • Baier, M. ve Dietz, K.J., 1997. The plant 2-Cys peroxiredoxin BAS1 is a nuclear-encoded chloroplast protein: its expressional regulation, phylogenetic origin, and implications for its specific physiological function in plants. The Plant Journal, 12, 179–190.
  • Baldoni, E., Genga, A. ve Cominelli, E., 2015. Plant MYB transcription factors: their role in drought response mechanisms. International Journal of Molecular Sciences, 16, 15811–15851.
  • Barkla, B.J., Vera-Estrella, R. ve Raymond, C., 2016. Single-cell-type quantitative proteomic and ionomic analysis of epidermal bladder cells from the halophyte model plant Mesembryanthemum crystallinum to identify salt-responsive proteins. BMC Plant Biology, 16, 110.
  • Batlang, U., Baisakh, N., Ambavaram, M.M. ve Pereira, A., 2013. Phenotypic and physiological evaluation for drought and salinity stress responses in rice. Methods in Molecular Biology, 956, 209–225.
  • Bilal, T., Bisma, P. ve Reiaz, M., 2014. Signaling in response to cold stress, in: I. Tahir, R.U. Rehman, K.R. Hakeem (Eds.), Plant Signaling: Understanding the Molecular Crosstalk, Springer India, pp. 193–226.
  • Boudet, J., Buitink, J., Hoekstra, F. A., Rogniaux, H., Larré, C. ve Satour, P., 2006. Comparative analysis of the heat stable proteome of radicles of Medicago truncatula seeds during germination identifies late embryogenesis abundant proteins associated with desiccation tolerance. Plant Physiology, 140, 1418–1436.
  • Chaves, M.M., Flexas, J. ve Pinheiro, C., 2009. Photosynthesis under drought and salt stress: regulation mechanisms from whole plant to cell. Annals of Botany, 103, 551–560.
  • Chen, F., Zhang, S., Jiang, H., Ma, W., Korpelainen, H. ve Li, C., 2011. Comparative proteomics analysis of salt response reveals sex-related photosynthetic inhibition by salinity in Populus cathayana cuttings. Journal of Proteome Research, 10(9), 3944–3958.
  • Chintakovid, N., Maipoka, M., Phaonakrop, N., Mickelbart, M.V., Roytrakul, S. ve Chadchawan, S., 2017. Proteomic analysis of drought-responsive proteins in rice reveals photosynthesis-related adaptations to drought stress. Acta Physiologiae Plantarum, 39(10), 1–13.
  • Chmielewska, K., Rodziewicz, P., Swarcewicz, B., Sawikowska, A., Krajewski, P., Marczak, Ł., Ciesiołka, D., Kuczynska, A., Mikołajczak, K., Ogrodowicz, P., Krystkowiak, K., Surma, M., Adamski, T., Bednarek, P. ve Stobiecki, M., 2016. Analysis of drought-induced proteomic and metabolomic changes in barley (Hordeum vulgare L.) leaves and roots unravels some aspects of biochemical mechanisms involved in drought tolerance. Frontiers in Plant Science, 7, 1–14.
  • Clement, M., Leonhardt, N., Droillard, M. J. ve Reiter, I., 2011. The cytosolic/nuclear HSC70 and HSP90 molecular chaperones are important for stomatal closure and modulate abscisic acid-dependent physiological responses in Arabidopsis. Plant Physiology, 156, 1481–1492.
  • Faghani, E., Gharechahi, J., Komatsu, S., Mirzaei, M., Khavarinejad, R.A., Najafi, F., Farsad, L.K. ve Salekdeh, G.H., 2015. Comparative physiology and proteomic analysis of two wheat genotypes contrasting in drought tolerance. Journal of Proteomics, 114, 1–15.
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Drought Stress and Plant Proteomics

Yıl 2020, , 286 - 297, 15.01.2020
https://doi.org/10.17714/gumusfenbil.568384

Öz

Plant need to overcome with stress to survive permanently. Drought is one
of the major abiotic stresses that affect growing and developing of plants and
productivity of crops. Within the scope of plant breeding studies, development
of agricultural plant species which are resistant to drought stress and have
high nutritional value will be provided by omics technologies such as genomics,
transcriptomics, proteomics and metabolomics. Proteomics is a strong method for
identification of proteins in a cell under drought stress conditions,
determination of expression levels, introducing post-translational
modifications, and understanding protein-protein interactions. Since there is a
significant change in protein expression level in plants exposed to different
stresses, the proteomics approach is quite important to elucidate the
relationship of proteins to stress tolerance. Drought stress usually causes
changes in expression levels of proteins that function in pathways such as
photosynthesis, energy metabolism, stress defense, protein metabolism and
signal transduction. Combination of physiological and molecular results in
proteomic studies in plants allows the discovery of some potential proteins or
metabolic pathways for drought tolerance. In this review, we discussed recent
information on plant responses to drought stress at protein level.

Kaynakça

  • Abreu, I., Farinha, A., Negrao, S., Goncalves, N., Fonseca, C., Rodrigues, M., Batista, R., Saibo, N. ve Oliveira, M., 2013. Coping with abiotic stress, proteome changes for crop improvement. Journal of Proteomics, 93, 145–168.
  • Alam, I., Sharmin, S. A., Kim, K., Yang, J. K., Choi, M. S. ve Lee, B., 2010. Proteome analysis of soybean roots subjected to short-term drought stress. Plant and Soil, 333, 491–505.
  • Babita, M., Maheswari, M., RaoL, M., Shanker, A.K. ve Rao, D.G., 2010. Osmotic adjustment, drought tolerance and yield in castor (Ricinus communis L.) hybrids. Environmental and Experimental Botany, 69, 243–249.
  • Baier, M. ve Dietz, K.J., 1997. The plant 2-Cys peroxiredoxin BAS1 is a nuclear-encoded chloroplast protein: its expressional regulation, phylogenetic origin, and implications for its specific physiological function in plants. The Plant Journal, 12, 179–190.
  • Baldoni, E., Genga, A. ve Cominelli, E., 2015. Plant MYB transcription factors: their role in drought response mechanisms. International Journal of Molecular Sciences, 16, 15811–15851.
  • Barkla, B.J., Vera-Estrella, R. ve Raymond, C., 2016. Single-cell-type quantitative proteomic and ionomic analysis of epidermal bladder cells from the halophyte model plant Mesembryanthemum crystallinum to identify salt-responsive proteins. BMC Plant Biology, 16, 110.
  • Batlang, U., Baisakh, N., Ambavaram, M.M. ve Pereira, A., 2013. Phenotypic and physiological evaluation for drought and salinity stress responses in rice. Methods in Molecular Biology, 956, 209–225.
  • Bilal, T., Bisma, P. ve Reiaz, M., 2014. Signaling in response to cold stress, in: I. Tahir, R.U. Rehman, K.R. Hakeem (Eds.), Plant Signaling: Understanding the Molecular Crosstalk, Springer India, pp. 193–226.
  • Boudet, J., Buitink, J., Hoekstra, F. A., Rogniaux, H., Larré, C. ve Satour, P., 2006. Comparative analysis of the heat stable proteome of radicles of Medicago truncatula seeds during germination identifies late embryogenesis abundant proteins associated with desiccation tolerance. Plant Physiology, 140, 1418–1436.
  • Chaves, M.M., Flexas, J. ve Pinheiro, C., 2009. Photosynthesis under drought and salt stress: regulation mechanisms from whole plant to cell. Annals of Botany, 103, 551–560.
  • Chen, F., Zhang, S., Jiang, H., Ma, W., Korpelainen, H. ve Li, C., 2011. Comparative proteomics analysis of salt response reveals sex-related photosynthetic inhibition by salinity in Populus cathayana cuttings. Journal of Proteome Research, 10(9), 3944–3958.
  • Chintakovid, N., Maipoka, M., Phaonakrop, N., Mickelbart, M.V., Roytrakul, S. ve Chadchawan, S., 2017. Proteomic analysis of drought-responsive proteins in rice reveals photosynthesis-related adaptations to drought stress. Acta Physiologiae Plantarum, 39(10), 1–13.
  • Chmielewska, K., Rodziewicz, P., Swarcewicz, B., Sawikowska, A., Krajewski, P., Marczak, Ł., Ciesiołka, D., Kuczynska, A., Mikołajczak, K., Ogrodowicz, P., Krystkowiak, K., Surma, M., Adamski, T., Bednarek, P. ve Stobiecki, M., 2016. Analysis of drought-induced proteomic and metabolomic changes in barley (Hordeum vulgare L.) leaves and roots unravels some aspects of biochemical mechanisms involved in drought tolerance. Frontiers in Plant Science, 7, 1–14.
  • Clement, M., Leonhardt, N., Droillard, M. J. ve Reiter, I., 2011. The cytosolic/nuclear HSC70 and HSP90 molecular chaperones are important for stomatal closure and modulate abscisic acid-dependent physiological responses in Arabidopsis. Plant Physiology, 156, 1481–1492.
  • Faghani, E., Gharechahi, J., Komatsu, S., Mirzaei, M., Khavarinejad, R.A., Najafi, F., Farsad, L.K. ve Salekdeh, G.H., 2015. Comparative physiology and proteomic analysis of two wheat genotypes contrasting in drought tolerance. Journal of Proteomics, 114, 1–15.
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  • Marrs, K.A., 1996. The functions and regulation of glutathione S-transferases in plants. Annual Review of Plant Physiology and Plant Molecular Biology, 47, 127–158.
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  • Mittler, R., 2002. Oxidative stress, antioxidants and stress tolerance. Trends in Plant Science, 7, 405–410.
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  • Moschen, S., Di Rienzo, J. A., Higgins, J., Tohge, T., Watanabe, M., González, S. ve Heinz, R. A., 2017. Integration of transcriptomic and metabolic data reveals hub transcription factors involved in drought stress response in sunflower (Helianthus annuus L.). Plant Molecular Biology, 94(4–5), 549–564.
  • Nakashima, K., Yamaguchi-Shinozaki, K. ve Shinozaki, K., 2014. The transcriptional regulatory network in the drought response and its crosstalk in abiotic stress responses including drought, cold, and heat. Frontiers in Plant Science, 5, 1–7.
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  • Nemati, N., Piro, A., Norouzi, M., Vaheda, M.M., Nisticò, D.M. ve Mazzuca, S., 2019. Comparative physiological and leaf proteomic analyses revealed the tolerant and sensitive traits to drought stress in two wheat parental lines and their F6 progenies. Environmental and Experimental Botany, 158, 223–237.
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  • Pitzschke, A., Forzani, C. ve Hirt, H., 2006. Reactive oxygen species signaling in plants. Antioxidants and Redox Signaling, 8, 1757–1764. Prasad, P.V.V., Pisipati, S.R., Momčilović, I. ve Ristic, Z., 2011. Independent and combined effects of high temperature and drought stress during grain filling on plant yield and chloroplast EF-Tu expression in spring wheat. Journal of Agronomy and Crop Science, 197, 430–441.
  • Pitzschke, A., Forzani, C. ve Hirt, H., 2006. Reactive oxygen species signaling in plants. Antioxidants and Redox Signaling, 8, 1757–1764.
  • Prasad, P.V.V., Pisipati, S.R., Momčilović, I. ve Ristic, Z., 2011. Independent and combined effects of high temperature and drought stress during grain filling on plant yield and chloroplast EF-Tu expression in spring wheat. Journal of Agronomy and Crop Science, 197, 430–441.
  • Rasheed, S., Bashir, K., Matsui, A., Iida, K., Tanaka, M. ve Seki, M., 2016. Transcriptomic analysis of soil-grown Arabidopsis thaliana roots and shoots in response to a drought stress. Frontiers in Plant Science, 7, 1–21.
  • Ravanel, S., Block, M.A., Rippert, P., Jabrin, S., Curien, G., Reeille, F. ve Douce, R., 2004. Methionine metabolism in plants: chloroplasts are autonomous for de novo methionine synthesis and can import S-adenosylmethionine from the cytosol. Journal of Biological Chemistry, 279, 22548–22557.
  • Reggiani, R., Nebuloni, M., Mattana, M. ve Brambilla, I., 2000. Anaerobic accumulation of amino acids in rice roots: role of the glutamine synthetase/glutamate synthase cycle. Amino Acids, 18, 207–217.
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  • Song, H., Zhao, R., Fan, P., Wang, X., Chen, X. ve Li, Y., 2009. Overexpression of AtHsp90.2, AtHsp90.5 and AtHsp90.7 in Arabidopsis thaliana enhances plant sensitivity to salt and drought stresses. Planta, 229, 955–964.
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Toplam 82 adet kaynakça vardır.

Ayrıntılar

Birincil Dil Türkçe
Konular Mühendislik
Bölüm Derlemeler
Yazarlar

Mustafa Yıldız 0000-0002-6819-9891

Fadimana Kaya Bu kişi benim 0000-0003-3173-1706

Hakan Terzi 0000-0003-4817-1100

Yayımlanma Tarihi 15 Ocak 2020
Gönderilme Tarihi 21 Mayıs 2019
Kabul Tarihi 22 Ekim 2019
Yayımlandığı Sayı Yıl 2020

Kaynak Göster

APA Yıldız, M., Kaya, F., & Terzi, H. (2020). Kuraklık Stresi ve Bitki Proteomiği. Gümüşhane Üniversitesi Fen Bilimleri Dergisi, 10(1), 286-297. https://doi.org/10.17714/gumusfenbil.568384