EN
Investigation of the Structural and Electronic Properties of the Novel Synthesized Methyl 2-(2-oxo-2H-chromen-4-ylamino) benzoate Compound by DFT Method and Evaluation of its Anti-Leishmania Agent Potential by Molecular Docking Study
Öz
Leishmaniasis is a disease caused by different species of the leishmania parasite, transmitted through the sandfly, within the group of protozoa. According to the World Health Organization, leishmaniasis is one of the most encountered seven tropical diseases. Trypanothione reductase is a vital enzyme for the parasite. This has made Trypanothione reductase a potential target in the treatment of leishmaniasis. The limitations of current therapeutic options and the high cost have increased the motivation for research on the inhibition of Trypanothione reductase. In this study, the structural and electronic properties of the newly synthesized compound methyl 2-(2-oxo-2H-chromen-4-ylamino) benzoate were calculated using DFT/B3LYP and 6-311++G(d,p) basis set. The calculated structural parameters were found to be highly compatible when compared with experimental studies. The crystal packing of the compound was examined through the Hirshfeld surface analysis method. When the potential of the compound to be used as a drug was evaluated using Lipinski criteria, no hindrance to its use in living organisms was found. As the crystal structure of the enzyme was unknown, homology modeling was performed. Finally, in the molecular docking study, the interaction mechanisms of the compound mentioned in the title and the compound clomipramine used as a control in the receptor's active site were examined. The results revealed that the compound mentioned in the title demonstrated a better potential compared to the control compound.
Anahtar Kelimeler
Destekleyen Kurum
This study was supported by project number (Grant No: 2013FBE013)
Kaynakça
- Barakat, A., Islam, M.S., Ali, M., Al-Majid, A.M., Alshahrani, S., Alamary, A.S., Yousuf, S., … & Choudhary, M.I. (2021). Regio-and stereoselective synthesis of a new series of spirooxindole pyrrolidine grafted thiochromene scaffolds as potential anticancer agents. Symmetry, 13(8): 1426.
- Biovia DS, (2020). BIOVIA discovery studio. Dassault Systèmes.
- Breda, S., Reva, I., Lapinski, L., Nowak, M., & Fausto, R. (2006). Infrared spectra of pyrazine, pyrimidine and pyridazine in solid argon. Journal of Molecular Structure, 786(2-3): 193-206.
- Cui, S-L., Wang, J., & Wang, Y-G. (2008). Efficient synthesis of 2-imino-1, 2-dihydroquinolines and 2-imino-thiochromenes via copper-catalyzed domino reaction. Tetrahedron, 64(3): 487-492.
- Frisch, E., Hratchian, H.P., & Dennington, R. (2009). Gaussview, Version 5.0. 8. Gaussian. Inc. Wallingford CT.
- Frisch, M.J., Trucks, G.W., Schlegel, H.B., Scuseria, G.E., Robb, M.A., Mennucci, B., Petersson, G.A., Nakatsuji, H., Caricato, M., … & Li, X. (2009). Gaussian 09, Revision C.01. Gaussian, Inc., Wallingford, CT.
- Govindarao, K., Srinivasan, N., Suresh, R., Raheja, R., Annadurai, S., Bhandare, R.R., & Shaik, A.B. (2022). Quinoline conjugated 2-azetidinone derivatives as prospective anti-breast cancer agents: In vitro antiproliferative and anti-EGFR activities, molecular docking and in-silico drug likeliness studies. Journal of Saudi Chemical Society, 26(3): 101471.
- Harris, R., Olson, A.J., & Goodsell, D.S. (2008). Automated prediction of ligand‐binding sites in proteins. Proteins: structure, function, and bioinformatics, 70(4): 1506-1517.
Ayrıntılar
Birincil Dil
İngilizce
Konular
Metroloji,Uygulamalı ve Endüstriyel Fizik
Bölüm
Araştırma Makalesi
Yazarlar
Erken Görünüm Tarihi
20 Şubat 2024
Yayımlanma Tarihi
1 Mart 2024
Gönderilme Tarihi
17 Ekim 2023
Kabul Tarihi
23 Kasım 2023
Yayımlandığı Sayı
Yıl 2024 Cilt: 14 Sayı: 1
APA
Bayrakdar, A. (2024). Investigation of the Structural and Electronic Properties of the Novel Synthesized Methyl 2-(2-oxo-2H-chromen-4-ylamino) benzoate Compound by DFT Method and Evaluation of its Anti-Leishmania Agent Potential by Molecular Docking Study. Journal of the Institute of Science and Technology, 14(1), 219-230. https://doi.org/10.21597/jist.1377134
AMA
1.Bayrakdar A. Investigation of the Structural and Electronic Properties of the Novel Synthesized Methyl 2-(2-oxo-2H-chromen-4-ylamino) benzoate Compound by DFT Method and Evaluation of its Anti-Leishmania Agent Potential by Molecular Docking Study. Iğdır Üniv. Fen Bil Enst. Der. 2024;14(1):219-230. doi:10.21597/jist.1377134
Chicago
Bayrakdar, Alpaslan. 2024. “Investigation of the Structural and Electronic Properties of the Novel Synthesized Methyl 2-(2-oxo-2H-chromen-4-ylamino) benzoate Compound by DFT Method and Evaluation of its Anti-Leishmania Agent Potential by Molecular Docking Study”. Journal of the Institute of Science and Technology 14 (1): 219-30. https://doi.org/10.21597/jist.1377134.
EndNote
Bayrakdar A (01 Mart 2024) Investigation of the Structural and Electronic Properties of the Novel Synthesized Methyl 2-(2-oxo-2H-chromen-4-ylamino) benzoate Compound by DFT Method and Evaluation of its Anti-Leishmania Agent Potential by Molecular Docking Study. Journal of the Institute of Science and Technology 14 1 219–230.
IEEE
[1]A. Bayrakdar, “Investigation of the Structural and Electronic Properties of the Novel Synthesized Methyl 2-(2-oxo-2H-chromen-4-ylamino) benzoate Compound by DFT Method and Evaluation of its Anti-Leishmania Agent Potential by Molecular Docking Study”, Iğdır Üniv. Fen Bil Enst. Der., c. 14, sy 1, ss. 219–230, Mar. 2024, doi: 10.21597/jist.1377134.
ISNAD
Bayrakdar, Alpaslan. “Investigation of the Structural and Electronic Properties of the Novel Synthesized Methyl 2-(2-oxo-2H-chromen-4-ylamino) benzoate Compound by DFT Method and Evaluation of its Anti-Leishmania Agent Potential by Molecular Docking Study”. Journal of the Institute of Science and Technology 14/1 (01 Mart 2024): 219-230. https://doi.org/10.21597/jist.1377134.
JAMA
1.Bayrakdar A. Investigation of the Structural and Electronic Properties of the Novel Synthesized Methyl 2-(2-oxo-2H-chromen-4-ylamino) benzoate Compound by DFT Method and Evaluation of its Anti-Leishmania Agent Potential by Molecular Docking Study. Iğdır Üniv. Fen Bil Enst. Der. 2024;14:219–230.
MLA
Bayrakdar, Alpaslan. “Investigation of the Structural and Electronic Properties of the Novel Synthesized Methyl 2-(2-oxo-2H-chromen-4-ylamino) benzoate Compound by DFT Method and Evaluation of its Anti-Leishmania Agent Potential by Molecular Docking Study”. Journal of the Institute of Science and Technology, c. 14, sy 1, Mart 2024, ss. 219-30, doi:10.21597/jist.1377134.
Vancouver
1.Alpaslan Bayrakdar. Investigation of the Structural and Electronic Properties of the Novel Synthesized Methyl 2-(2-oxo-2H-chromen-4-ylamino) benzoate Compound by DFT Method and Evaluation of its Anti-Leishmania Agent Potential by Molecular Docking Study. Iğdır Üniv. Fen Bil Enst. Der. 01 Mart 2024;14(1):219-30. doi:10.21597/jist.1377134