Araştırma Makalesi
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Antimikrobiyal Peptitlerin Bibliyometrik Analizive Rasyonel Dizaynı

Yıl 2026, Cilt: 16 Sayı: 1, 96 - 118, 01.03.2026
https://doi.org/10.21597/jist.1749568
https://izlik.org/JA39HW75NC

Öz

Antibiyotik direncinin küresel bir sağlık tehdidi haline gelmesi, alternatif antimikrobiyal ajanların geliştirilmesini acil bir öncelik haline getirmiştir. Bu bağlamda, mikroorganizmalar tarafından doğal olarak sentezlenen antimikrobiyal peptitler (AMP’ler), geniş etki spektrumları, düşük direnç geliştirme riski ve çoklu uygulama potansiyelleriyle dikkat çekmektedir.
Bu çalışmada, AMP’lerin mikrobiyal kaynaklarına göre sınıflandırılması, etki mekanizmaları, ticari uygulamaları, amino asit kompozisyonları ve rasyonel dizayn ilkeleri detaylı şekilde. Bakteriyosinler, lipopeptitler, siklik peptitler ve nonribozomal yapıdaki peptitler gibi alt grupların gıda, tarım, klinik tedavi ve kozmetik alanlarında kullanımları değerlendirilmiştir. Ayrıca, AMP tasarımında kullanılan biyoinformatik araçlara ve klinik uygulamalardaki kısıtlamalara da yer verilmiştir.
Çalışmanın özgün katkısı, Web of Science (WoS) veri tabanında yer alan 2010–2025 yılları arasındaki 18.029 araştırma makalesine dayanan kapsamlı bir bibliyometrik analiz sunmasıdır. Bu analiz, AMP alanındaki yayın eğilimlerini, ülkeler ve araştırmacılar bazında üretim yoğunluklarını, anahtar kelime kümelenmelerini ve sürdürülebilir kalkınma hedefleri (SKH) ile olan ilişkilerini ortaya koymaktadır. Bulgular, AMP araştırmalarının özellikle “İyi Sağlık ve Refah” hedefiyle yüksek oranda örtüştüğünü ve küresel yayın üretiminin büyük ölçüde ABD, Çin ve Hindistan gibi ülkelerde yoğunlaştığını göstermektedir. Bibliyometrik veriler, AMP araştırmalarının bilimsel olgunluğa ulaştığını ve disiplinler arası uygulamalar için güçlü bir temel oluşturduğunu ortaya koymaktadır.

Kaynakça

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  • Aparici-Carratalá, D., Esclapez, J., Bautista, V., Bonete, M. J., & Camacho, M. (2023). Archaea: current and potential biotechnological applications. Research in Microbiology, 174(7), 104080.
  • Bar Tripathi, A. K., & Vishwanatha, J. K. (2022). Role of anti-cancer peptides as immunomodulatory agents: potential and design strategy. Pharmaceutics, 14(12), 2686.
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Bibliometric Analysis and Rational Design of Antimicrobial Peptides

Yıl 2026, Cilt: 16 Sayı: 1, 96 - 118, 01.03.2026
https://doi.org/10.21597/jist.1749568
https://izlik.org/JA39HW75NC

Öz

The global rise of antibiotic resistance has made the development of alternative antimicrobial agents an urgent priority. In this context, antimicrobial peptides (AMPs) naturally synthesized by microorganisms stand out due to their broad-spectrum activity, low potential for resistance development, and wide-ranging applications.
This stady, comprehensively examines the classification of AMPs based on their microbial origins, their mechanisms of action, commercial applications, amino acid compositions, and principles of rational design. Subgroups such as bacteriocins, lipopeptides, cyclic peptides, and non-ribosomal peptides are evaluated in terms of their uses in food preservation, agriculture, clinical therapies, and cosmetics. The review also highlights bioinformatics tools used in AMP design and discusses current limitations in clinical applications.
A unique contribution of this study is its extensive bibliometric analysis based on 18,029 research articles published between 2010 and 2025 in the Web of Science (WoS) database. This analysis reveals trends in AMP-related publications, country- and author-based research output, keyword clustering, and alignment with the United Nations Sustainable Development Goals (SDGs). The results demonstrate that AMP research is strongly aligned with the goal of “Good Health and Well-being,” and that global publication output is concentrated in countries such as the United States, China, and India. Overall, the bibliometric data indicate that AMP research has reached scientific maturity and provides a robust foundation for interdisciplinary applications.

Kaynakça

  • Al-Quwaie, D. A. (2024). The role of Streptomyces species in controlling plant diseases: a comprehensive review. Australasian Plant Pathology, 53(1), 1-14.
  • Andersson, D. I., Hughes, D., & Kubicek-Sutherland, J. Z. (2016). Mechanisms and consequences of bacterial resistance to antimicrobial peptides. Drug Resistance Updates, 26, 43–57. https://doi.org/10.1016/j.drup.2016.04.002
  • Aparici-Carratalá, D., Esclapez, J., Bautista, V., Bonete, M. J., & Camacho, M. (2023). Archaea: current and potential biotechnological applications. Research in Microbiology, 174(7), 104080.
  • Bar Tripathi, A. K., & Vishwanatha, J. K. (2022). Role of anti-cancer peptides as immunomodulatory agents: potential and design strategy. Pharmaceutics, 14(12), 2686.
  • Barka, E. A., Vatsa, P., Sanchez, L., Gaveau-Vaillant, N., Jacquard, C., Meier-Kolthoff, J. P., ... & Clément, C. (2016). Taxonomy, physiology, and natural products of Streptomyces. Microbiology and Molecular Biology Reviews, 80(1), 1-43.
  • Baruzzi, F., Quintieri, L., Morea, M., & Caputo, L. (2011). Antimicrobial compounds produced by Bacillus spp. and applications in food. Science against microbial pathogens: communicating current research and technological advances, 2(1), 1102-1111.
  • Batoni, G., Maisetta, G., Brancatisano, F. L., Esin, S., & Campa, M. (2011). Use of antimicrobial peptides against microbial biofilms: advantages and limits. Current Medicinal Chemistry, 18(2), 256-279. https://doi.org/10.2174/092986711795656325
  • Bibb, M. (1996). The regulation of antibiotic production in Streptomyces coelicolor A3 (2). Microbiology, 142(6), 1335-1344.
  • Brogden, K. A. (2005). Antimicrobial peptides: Pore formers or metabolic inhibitors in bacteria? Nature Reviews Microbiology, 3(3), 238–250. https://doi.org/10.1038/nrmicro1098
  • Campo, N., Scherman, M., Derzelle, S., Duport, C., & Caillet, C. (2008). Pediocin production and use as a biopreservative in food. International Journal of Food Microbiology, 122(1-2), 42–52. https://doi.org/10.1016/j.ijfoodmicro.2007.11.023
  • Chatterjee, S., Paul, M., Xie, L., & van der Donk, W. A. (2005). Biosynthesis and mode of action of lantibiotics. Chemical Reviews, 105(2), 633–684. https://doi.org/10.1021/cr030103e
  • Chaudhary, K., Kumar, R., Singh, S., & Raghava, G. P. S. (2016). A web server and mobile app for computing hemolytic potency of peptides. Scientific Reports, 6, 22843. https://doi.org/10.1038/srep22843
  • Chhetri, G., Kim, M. J., Kim, I., Tran, D. V., Kim, Y. W., Kim, H. W., & Seo, T. (2024). Streptomyces tagetis sp. nov., a chromomycin producing bacteria isolated from the roots of Tagetes patula. Frontiers in Microbiology, 15, 1361583.
  • Cotter, P. D., Hill, C., & Ross, R. P. (2005). Bacteriocins: Developing innate immunity for food. Nature Reviews Microbiology, 3(10), 777–788. https://doi.org/10.1038/nrmicro1273
  • Cotter, P. D., Ross, R. P., & Hill, C. (2013). Bacteriocins—a viable alternative to antibiotics? Nature Reviews Microbiology, 11(2), 95–105. https://doi.org/10.1038/nrmicro2937
  • DasSarma, S.,& DasSarma, P. (2012). Halocins and sulfolobicins: The emerging class of archaeal protein and peptide antibiotics. Frontiers in Microbiology, 3, 327.
  • Delves-Broughton, J. (2005). Nisin as a food preservative. Food Australia, 57(9), 445–451.
  • Demain, A. L. (2019). New applications of microbial products. Biotechnology And Biological Frontiers, 201-213.
  • Divyashree, M., Mani, M. K., Reddy, D., Kumavath, R., Ghosh, P., Azevedo, V., & Barh, D. (2020). Clinical applications of antimicrobial peptides (AMPs): where do we stand now? Protein and Peptide Letters, 27(2), 120-134. https://doi.org/10.2174/092986711795656325
  • Fjell, C. D., Hiss, J. A., Hancock, R. E., & Schneider, G. (2012). Designing antimicrobial peptides: Form follows function. Nature Reviews Drug Discovery, 11(1), 37–51. https://doi.org/10.1038/nrd3591
  • Francis, D. (2017). Antimicrobials from microbes. Bioresources and bioprocess in biotechnology: volume 2: exploring potential biomolecules, 291-326.
  • Fungi, X., Zhang, X., & Li, M. (2020). Fungal peptides and their applications. Journal of Mycology Research, 12(4), 245-260.
  • Gálvez, A., Abriouel, H., López, R. L., & Ben Omar, N. (2007). Bacteriocin-based strategies for food biopreservation. International Journal of Food Microbiology, 120(1-2), 51-70.
  • Gautier, R., Douguet, D., Antonny, B., & Drin, G. (2008). HELIQUEST: A web server to screen sequences with specific α-helical properties. Bioinformatics, 24(18), 2101–2102. https://doi.org/10.1093/bioinformatics/btn392
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Toplam 82 adet kaynakça vardır.

Ayrıntılar

Birincil Dil Türkçe
Konular Endüstriyel Biyoteknoloji (Diğer)
Bölüm Araştırma Makalesi
Yazarlar

Safiye Elif Korcan 0000-0001-7875-5516

Şah İsmail Çivi 0000-0001-5031-0478

Arzu Ünal 0000-0003-4427-3169

Gönderilme Tarihi 24 Temmuz 2025
Kabul Tarihi 7 Ağustos 2025
Yayımlanma Tarihi 1 Mart 2026
DOI https://doi.org/10.21597/jist.1749568
IZ https://izlik.org/JA39HW75NC
Yayımlandığı Sayı Yıl 2026 Cilt: 16 Sayı: 1

Kaynak Göster

APA Korcan, S. E., Çivi, Ş. İ., & Ünal, A. (2026). Antimikrobiyal Peptitlerin Bibliyometrik Analizive Rasyonel Dizaynı. Journal of the Institute of Science and Technology, 16(1), 96-118. https://doi.org/10.21597/jist.1749568
AMA 1.Korcan SE, Çivi Şİ, Ünal A. Antimikrobiyal Peptitlerin Bibliyometrik Analizive Rasyonel Dizaynı. Iğdır Üniv. Fen Bil Enst. Der. 2026;16(1):96-118. doi:10.21597/jist.1749568
Chicago Korcan, Safiye Elif, Şah İsmail Çivi, ve Arzu Ünal. 2026. “Antimikrobiyal Peptitlerin Bibliyometrik Analizive Rasyonel Dizaynı”. Journal of the Institute of Science and Technology 16 (1): 96-118. https://doi.org/10.21597/jist.1749568.
EndNote Korcan SE, Çivi Şİ, Ünal A (01 Mart 2026) Antimikrobiyal Peptitlerin Bibliyometrik Analizive Rasyonel Dizaynı. Journal of the Institute of Science and Technology 16 1 96–118.
IEEE [1]S. E. Korcan, Ş. İ. Çivi, ve A. Ünal, “Antimikrobiyal Peptitlerin Bibliyometrik Analizive Rasyonel Dizaynı”, Iğdır Üniv. Fen Bil Enst. Der., c. 16, sy 1, ss. 96–118, Mar. 2026, doi: 10.21597/jist.1749568.
ISNAD Korcan, Safiye Elif - Çivi, Şah İsmail - Ünal, Arzu. “Antimikrobiyal Peptitlerin Bibliyometrik Analizive Rasyonel Dizaynı”. Journal of the Institute of Science and Technology 16/1 (01 Mart 2026): 96-118. https://doi.org/10.21597/jist.1749568.
JAMA 1.Korcan SE, Çivi Şİ, Ünal A. Antimikrobiyal Peptitlerin Bibliyometrik Analizive Rasyonel Dizaynı. Iğdır Üniv. Fen Bil Enst. Der. 2026;16:96–118.
MLA Korcan, Safiye Elif, vd. “Antimikrobiyal Peptitlerin Bibliyometrik Analizive Rasyonel Dizaynı”. Journal of the Institute of Science and Technology, c. 16, sy 1, Mart 2026, ss. 96-118, doi:10.21597/jist.1749568.
Vancouver 1.Safiye Elif Korcan, Şah İsmail Çivi, Arzu Ünal. Antimikrobiyal Peptitlerin Bibliyometrik Analizive Rasyonel Dizaynı. Iğdır Üniv. Fen Bil Enst. Der. 01 Mart 2026;16(1):96-118. doi:10.21597/jist.1749568