Araştırma Makalesi

Kidney Segmentations Using CNN models

Cilt: 4 Sayı: 1 24 Haziran 2023
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Kidney Segmentations Using CNN models

Öz

For medical diagnostic tests, kidney segmentation from high-volume imagery is an important major. Since 3D medical images need a lot of GPU memory, slices and patches are used for training and inference in traditional neural network variant architectures, which necessarily slows down contextual learning. In this research, Mobile Net and Efficient Net CNN models were trained for segmenting human kidney images generated from The Human Biomolecular Atlas Program (HuBMAP). The purpose of this work is to evaluate the effectiveness of different strategies for Glomeruli identification in order to solve the issue. The high size images were decoded to be fitted and trained in the models first, then the CNN models were trained. The CNN models result show that the Efficient Net has the highest accuracy rate with 99.49 %, and Mobile Net with 99.33 %.

Anahtar Kelimeler

Kaynakça

  1. “What is HuBMAP”, HuBMAP, Accessed in 10.04.2021, Available [Online]: https://hubmapconsortium.org/what-is-hubmap.
  2. “What Is Image Segmentation?”, MathWorks, Accessed in 11.06.2021, Available [Online]: https://www.mathworks.com/discovery/image-segmentation.html.
  3. B. De Brabandere, D. Neven, L. Van Gool, “Semantic instance segmentation for autonomous driving”, in: The IEEE Conference on Computer Vision and Pattern Recognition (CVPR), Workshops, 2017.
  4. R. I. Haque, J. Neubert, “Deep learning approaches to biomedical image segmentation”, Informatics in Medicine Unlocked, 2020.
  5. J. Song, L. Xiao, M. Molaei, Z. Lian, “Multi-layer boosting sparse convolutional model for generalized nuclear segmentation from histopathology images”, Knowledge-Based Systems, vol. 176, pp. 40 – 53, 2019.
  6. S. M. Sheehan, & R. Korstanje, “Automatic glomerular identification and quantification of histological phenotypes using image analysis and machine learning”, American Journal of Physiology-Renal Physiology, vol. 315, no. 6, pp. 1644-1651, 2018.
  7. J. Gallego, A, Pedraza, S. Lopez, G. Steiner, L. Gonzalez, A. Laurinavicius, & G. Bueno, “Glomerulus classification and detection based on convolutional neural networks”, Journal of Imaging, vol. 4, no. 1, pp. 20, 2018.
  8. J. D. Bukowy, A. Dayton, D. Cloutier, A. D. Manis, A. Staruschenko, J. H. Lombard & A. W. Cowley, “Region-based convolutional neural nets for localization of glomeruli in trichrome-stained whole kidney sections”, Journal of the American Society of Nephrology, vol. 29, no. 8, pp.2081-2088, 2018.

Ayrıntılar

Birincil Dil

İngilizce

Konular

Yapay Zeka

Bölüm

Araştırma Makalesi

Yayımlanma Tarihi

24 Haziran 2023

Gönderilme Tarihi

15 Eylül 2022

Kabul Tarihi

5 Mart 2023

Yayımlandığı Sayı

Yıl 2023 Cilt: 4 Sayı: 1

Kaynak Göster

APA
Mansour, M., Demirsoy, M. S., & Kutlu, M. Ç. (2023). Kidney Segmentations Using CNN models. Journal of Smart Systems Research, 4(1), 1-13. https://doi.org/10.58769/joinssr.1175622
AMA
1.Mansour M, Demirsoy MS, Kutlu MÇ. Kidney Segmentations Using CNN models. JoinSSR. 2023;4(1):1-13. doi:10.58769/joinssr.1175622
Chicago
Mansour, Mohammed, Mert Süleyman Demirsoy, ve Mustafa Çağrı Kutlu. 2023. “Kidney Segmentations Using CNN models”. Journal of Smart Systems Research 4 (1): 1-13. https://doi.org/10.58769/joinssr.1175622.
EndNote
Mansour M, Demirsoy MS, Kutlu MÇ (01 Haziran 2023) Kidney Segmentations Using CNN models. Journal of Smart Systems Research 4 1 1–13.
IEEE
[1]M. Mansour, M. S. Demirsoy, ve M. Ç. Kutlu, “Kidney Segmentations Using CNN models”, JoinSSR, c. 4, sy 1, ss. 1–13, Haz. 2023, doi: 10.58769/joinssr.1175622.
ISNAD
Mansour, Mohammed - Demirsoy, Mert Süleyman - Kutlu, Mustafa Çağrı. “Kidney Segmentations Using CNN models”. Journal of Smart Systems Research 4/1 (01 Haziran 2023): 1-13. https://doi.org/10.58769/joinssr.1175622.
JAMA
1.Mansour M, Demirsoy MS, Kutlu MÇ. Kidney Segmentations Using CNN models. JoinSSR. 2023;4:1–13.
MLA
Mansour, Mohammed, vd. “Kidney Segmentations Using CNN models”. Journal of Smart Systems Research, c. 4, sy 1, Haziran 2023, ss. 1-13, doi:10.58769/joinssr.1175622.
Vancouver
1.Mohammed Mansour, Mert Süleyman Demirsoy, Mustafa Çağrı Kutlu. Kidney Segmentations Using CNN models. JoinSSR. 01 Haziran 2023;4(1):1-13. doi:10.58769/joinssr.1175622

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