Araştırma Makalesi
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Morphological and Molecular Characterization of Hebeloma subtortum (Hymenogastraceae), a New Record Macrofungus from Bingöl Province, Turkey

Yıl 2019, Cilt: 19 Sayı: 1, 1 - 10, 27.03.2019
https://doi.org/10.17475/kastorman.543375

Öz

Aim of Study: The specimen identified as Hebeloma subtortum based on both morphological and molecular characterizations. Area of Study: Samples were collected from Bingöl province and the study was conducted at the Department of Molecular Biology and Genetics in Van Yüzüncü Yıl University.
Material and Methods: Characters of pileus, stipe, lamellae and basidia, cystidia, spores were used as macroscopic and microscopic features, respectively. DNA sequences of two loci including the internal transcribed spacer (ITS) region and the large subunit (LSU) of nuclear ribosomal RNA gene were used to show the evolutionary relationship and taxonomic position of the species within Hebeloma genus. The DNA sequences of the above-mentioned regions of H. subtortum were compared to those of the same and different species of the genus downloaded from NCBI. Main results: In phylogenetic analyses, H. subtortum distinctly clustered with its representatives retrieved from NCBI with high bootstrap value. The ITS tree was more informative compared to LSU. Hebeloma subtortum closely grouped with H. mesophaeum in the ITS tree. Research highlights: Hebeloma subtortum has been described and illustrated as a new record from Turkey.

Kaynakça

  • Aanen, D.K., Kuyper, T. W., Boekhout, T. & Hoekstra, R.F. (2000). Phylogenetic relationships in the genus Hebeloma based on ITS 1 and 2 sequences, with special emphasis on the Hebeloma crustuliniforme complex. -Mycologia 92, 269–281.
  • Aanen, D.K., Kuyper, T.W. & Hoekstra, R.F. (2001). A widely distributed ITS polymorphism within a biological species of the ectomycorrhizal fungus Hebeloma velutipes. Mycological Research 105,284–290.
  • Altschul, S.F., Gish, W., Miller, W., Myers, E.W. & Lipman, D.J. (1997). Basic local alignment search tool. Journal of Molecular Biology 215, 403-410.
  • Beker, H.J., Eberhardt, U. & Vesterholt J. (2016). Fungi Europaei Vol. 14, Hebeloma (Fr.) P. Kumm. Edizioni Tecnografica. Boyle, H., Zimdars, B., Renker, C. & Buscot, F. (2006). A molecular phylogeny of Hebeloma species from Europe. –Mycological Research 110, 369–380.
  • Demirel, R. (2016). Comparison of rDNA regions (ITS, LSU, and SSU) of some Aspergillus, Penicillium, and Talaromyces spp. Turkish Journal of Botany 40, 576-583. Doğan, H.H. & Kurt, F. (2016). New macrofungi records from Turkey and macrofungal diversity of Pozantı-Adana. Turkish Journal of Botany 40,209-217.
  • Doyle, J.J. & Doyle, J.L. (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19,11-15.
  • Eberhardt, U., Beker, H.J. & Vesterholt, J. (2015a). Decrypting the Hebeloma crustuliniforme complex: European species of Hebeloma section Denudata subsection Denudata (Agaricales). Persoonia 35, 101–147.
  • Eberhardt, U., Ronikier, A., Schütz, N. & Beker, H.J. (2015b). The genus Hebeloma in the alpine belt of the Carpathians including two new species. Mycologia 107 (6), 1285-1303.
  • Güngör, H., Solak, M.H., Allı, H., Işıloğlu, M. & Kalmış, E. (2015). New records for Turkey and contributions to the macrofungal diversity of Isparta Province. Turkish Journal of Botany 39, 867-877.
  • Mycobank. http://www.mycobank.org/quicksearch.aspx; accessed 25 February 2018.
  • Sesli, E. & Denchev, C.M. (2014). Checklists of the myxomycetes, larger ascomycetes, and larger basidiomycetes in Turkey. 6th edn. Mycotaxon Checklists Online. 1-136. (http://www.mycotaxon.com/resources/checklists/sesli-v106-checklist.pdf).
  • Sesli E., Contu M., Vila J., Moreau P.A. & Battistin, E. (2015). Taxonomic studies on some agaricoid and boletoid fungi of Turkey. Turkish Journal of Botany 39, 134-146.
  • Sesli, E., Örtücü, S., & Aytaç, E. (2018). Türkiye mikotası için yeni kayıtlar (Basidiomycota-Agaricales). Bağbahçe Bilim Dergisi 5(1),15-20.
  • Shimono Y., Kato M. & Takamatsu, S. (2004). Molecular phylogeny of Russulaceae (Basidiomycetes; Russulales) inferred from the nucleotide sequences of nuclear large subunit rDNA. Mycoscience 45(5), 303-316.
  • Smith, A.H., Evenson, V.S. & Mitchel, D.H. (1983). The veiled species of hebeloma in the Western United States, Published in the United States.
  • Solak, M.H., Isıloğlu, M., Erbil, K. & Allı, H. (2015). Macrofungi of Turkey Checklist (2nd ed.) Üniversiteliler Ofset, İzmir.
  • Tamura, K. & Nei, N. (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution 10, 512-526.
  • Tamura, K., Stecher, G., Peterson, D., Filipski, A., M. & Kumar, S. (2013). MEGA 6: Molecular evolutionary genetics analysis version 6.0. Molecular Biology Evolution 30(12), 2725–2729.
  • Vesterholt J., Eberhardt U. & Beker, H.J. (2014). Epitypification of Hebeloma crustuliniforme. Mycological Progress 13, 553–562.
  • Vilgalys, R., & Hester, M. (1990). Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172, 4239-4246.
  • Vizzini, A., Ercole, E. & Contu, M. (2012). A contribution to the ITS-LSU phylogeny of the genus Leucopaxillus (/tricholomatoid clade, Agaricales), with three new genera and notes on Porpoloma. Mycosphere 3, 79–90.
  • Wen, J. & Zimmer, E.A. (1996). Phylogeny and biogeography of Panax L. (the Ginseng Genus, Araliaceae): Inferences from ITS sequences of nuclear ribosomal DNA. Molecular Phylogenetics and Evolution 6, 167–177.
  • Yılmaz Ersel, F. (2005). New records for the macromycota of Turkey from Balıkesir Province. Turkish

Bingöl ilinden yeni bir kayıt olarak Hebeloma subtortum (Hymenogastraceae) türünün morfolojik ve moleküler karakterizasyonu

Yıl 2019, Cilt: 19 Sayı: 1, 1 - 10, 27.03.2019
https://doi.org/10.17475/kastorman.543375

Öz

Çalışmanın Amacı: Hebeloma subtortum türü hem morfolojik hem de moleküler karakterizasyonlara dayanarak tanımlanmıştır.
Çalışma Alanı: Örnekler Bingöl ilinden toplanmış ve çalışma Van Yüzüncü Yıl Üniversitesi Moleküler Biyoloji ve Genetik Bölümü'nde yapılmıştır.
Gereç ve Yöntemler: Şapka, sap, lamel yapıları ve bazidya, sistidya, spor yapıları sırasıyla makroskopik ve mikroskopik özellikler olarak kullanılmıştır. Nükleer ribozomal iç aralayıcı bölge (nrITS) ve ribozomal en büyük alt birim (LSU) olmak üzere iki DNA bölgesi çalışılan türün evrimsel ilişkisini ve Hebeloma cinsi içindeki taksonomik konumunu göstermek için kullanılmıştır. Çalışılan türün DNA dizileri, NCBI very tabanından indirilen cinse ait aynı ve farklı türlerle karşılaştırılmıştır.
Ana sonuçlar: Filogenetik analizlerde, H. subtortum, yüksek bootstrap değeri ile NCBI'den alınan temsilcileri ile belirgin bir şekilde kümelenmiştir. ITS ağacı, LSU'ya kıyasla daha bilgilendirici olmuştur. H. subtortum, ITS ağacında H. mesophaeum ile yakın gruplanmıştır.
Araştırma konuları: Hebeloma subtortum, Türkiye'den yeni bir kayıt olarak tanımlanmış ve gösterilmiştir.

Kaynakça

  • Aanen, D.K., Kuyper, T. W., Boekhout, T. & Hoekstra, R.F. (2000). Phylogenetic relationships in the genus Hebeloma based on ITS 1 and 2 sequences, with special emphasis on the Hebeloma crustuliniforme complex. -Mycologia 92, 269–281.
  • Aanen, D.K., Kuyper, T.W. & Hoekstra, R.F. (2001). A widely distributed ITS polymorphism within a biological species of the ectomycorrhizal fungus Hebeloma velutipes. Mycological Research 105,284–290.
  • Altschul, S.F., Gish, W., Miller, W., Myers, E.W. & Lipman, D.J. (1997). Basic local alignment search tool. Journal of Molecular Biology 215, 403-410.
  • Beker, H.J., Eberhardt, U. & Vesterholt J. (2016). Fungi Europaei Vol. 14, Hebeloma (Fr.) P. Kumm. Edizioni Tecnografica. Boyle, H., Zimdars, B., Renker, C. & Buscot, F. (2006). A molecular phylogeny of Hebeloma species from Europe. –Mycological Research 110, 369–380.
  • Demirel, R. (2016). Comparison of rDNA regions (ITS, LSU, and SSU) of some Aspergillus, Penicillium, and Talaromyces spp. Turkish Journal of Botany 40, 576-583. Doğan, H.H. & Kurt, F. (2016). New macrofungi records from Turkey and macrofungal diversity of Pozantı-Adana. Turkish Journal of Botany 40,209-217.
  • Doyle, J.J. & Doyle, J.L. (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19,11-15.
  • Eberhardt, U., Beker, H.J. & Vesterholt, J. (2015a). Decrypting the Hebeloma crustuliniforme complex: European species of Hebeloma section Denudata subsection Denudata (Agaricales). Persoonia 35, 101–147.
  • Eberhardt, U., Ronikier, A., Schütz, N. & Beker, H.J. (2015b). The genus Hebeloma in the alpine belt of the Carpathians including two new species. Mycologia 107 (6), 1285-1303.
  • Güngör, H., Solak, M.H., Allı, H., Işıloğlu, M. & Kalmış, E. (2015). New records for Turkey and contributions to the macrofungal diversity of Isparta Province. Turkish Journal of Botany 39, 867-877.
  • Mycobank. http://www.mycobank.org/quicksearch.aspx; accessed 25 February 2018.
  • Sesli, E. & Denchev, C.M. (2014). Checklists of the myxomycetes, larger ascomycetes, and larger basidiomycetes in Turkey. 6th edn. Mycotaxon Checklists Online. 1-136. (http://www.mycotaxon.com/resources/checklists/sesli-v106-checklist.pdf).
  • Sesli E., Contu M., Vila J., Moreau P.A. & Battistin, E. (2015). Taxonomic studies on some agaricoid and boletoid fungi of Turkey. Turkish Journal of Botany 39, 134-146.
  • Sesli, E., Örtücü, S., & Aytaç, E. (2018). Türkiye mikotası için yeni kayıtlar (Basidiomycota-Agaricales). Bağbahçe Bilim Dergisi 5(1),15-20.
  • Shimono Y., Kato M. & Takamatsu, S. (2004). Molecular phylogeny of Russulaceae (Basidiomycetes; Russulales) inferred from the nucleotide sequences of nuclear large subunit rDNA. Mycoscience 45(5), 303-316.
  • Smith, A.H., Evenson, V.S. & Mitchel, D.H. (1983). The veiled species of hebeloma in the Western United States, Published in the United States.
  • Solak, M.H., Isıloğlu, M., Erbil, K. & Allı, H. (2015). Macrofungi of Turkey Checklist (2nd ed.) Üniversiteliler Ofset, İzmir.
  • Tamura, K. & Nei, N. (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution 10, 512-526.
  • Tamura, K., Stecher, G., Peterson, D., Filipski, A., M. & Kumar, S. (2013). MEGA 6: Molecular evolutionary genetics analysis version 6.0. Molecular Biology Evolution 30(12), 2725–2729.
  • Vesterholt J., Eberhardt U. & Beker, H.J. (2014). Epitypification of Hebeloma crustuliniforme. Mycological Progress 13, 553–562.
  • Vilgalys, R., & Hester, M. (1990). Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172, 4239-4246.
  • Vizzini, A., Ercole, E. & Contu, M. (2012). A contribution to the ITS-LSU phylogeny of the genus Leucopaxillus (/tricholomatoid clade, Agaricales), with three new genera and notes on Porpoloma. Mycosphere 3, 79–90.
  • Wen, J. & Zimmer, E.A. (1996). Phylogeny and biogeography of Panax L. (the Ginseng Genus, Araliaceae): Inferences from ITS sequences of nuclear ribosomal DNA. Molecular Phylogenetics and Evolution 6, 167–177.
  • Yılmaz Ersel, F. (2005). New records for the macromycota of Turkey from Balıkesir Province. Turkish
Toplam 23 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Bölüm Makaleler
Yazarlar

Ayten Dizkırıcı

İsmail Acar Bu kişi benim

Ayşenur Kalmer Bu kişi benim

Yusuf Uzun Bu kişi benim

Yayımlanma Tarihi 27 Mart 2019
Yayımlandığı Sayı Yıl 2019 Cilt: 19 Sayı: 1

Kaynak Göster

APA Dizkırıcı, A., Acar, İ., Kalmer, A., Uzun, Y. (2019). Morphological and Molecular Characterization of Hebeloma subtortum (Hymenogastraceae), a New Record Macrofungus from Bingöl Province, Turkey. Kastamonu University Journal of Forestry Faculty, 19(1), 1-10. https://doi.org/10.17475/kastorman.543375
AMA Dizkırıcı A, Acar İ, Kalmer A, Uzun Y. Morphological and Molecular Characterization of Hebeloma subtortum (Hymenogastraceae), a New Record Macrofungus from Bingöl Province, Turkey. Kastamonu University Journal of Forestry Faculty. Mart 2019;19(1):1-10. doi:10.17475/kastorman.543375
Chicago Dizkırıcı, Ayten, İsmail Acar, Ayşenur Kalmer, ve Yusuf Uzun. “Morphological and Molecular Characterization of Hebeloma Subtortum (Hymenogastraceae), a New Record Macrofungus from Bingöl Province, Turkey”. Kastamonu University Journal of Forestry Faculty 19, sy. 1 (Mart 2019): 1-10. https://doi.org/10.17475/kastorman.543375.
EndNote Dizkırıcı A, Acar İ, Kalmer A, Uzun Y (01 Mart 2019) Morphological and Molecular Characterization of Hebeloma subtortum (Hymenogastraceae), a New Record Macrofungus from Bingöl Province, Turkey. Kastamonu University Journal of Forestry Faculty 19 1 1–10.
IEEE A. Dizkırıcı, İ. Acar, A. Kalmer, ve Y. Uzun, “Morphological and Molecular Characterization of Hebeloma subtortum (Hymenogastraceae), a New Record Macrofungus from Bingöl Province, Turkey”, Kastamonu University Journal of Forestry Faculty, c. 19, sy. 1, ss. 1–10, 2019, doi: 10.17475/kastorman.543375.
ISNAD Dizkırıcı, Ayten vd. “Morphological and Molecular Characterization of Hebeloma Subtortum (Hymenogastraceae), a New Record Macrofungus from Bingöl Province, Turkey”. Kastamonu University Journal of Forestry Faculty 19/1 (Mart 2019), 1-10. https://doi.org/10.17475/kastorman.543375.
JAMA Dizkırıcı A, Acar İ, Kalmer A, Uzun Y. Morphological and Molecular Characterization of Hebeloma subtortum (Hymenogastraceae), a New Record Macrofungus from Bingöl Province, Turkey. Kastamonu University Journal of Forestry Faculty. 2019;19:1–10.
MLA Dizkırıcı, Ayten vd. “Morphological and Molecular Characterization of Hebeloma Subtortum (Hymenogastraceae), a New Record Macrofungus from Bingöl Province, Turkey”. Kastamonu University Journal of Forestry Faculty, c. 19, sy. 1, 2019, ss. 1-10, doi:10.17475/kastorman.543375.
Vancouver Dizkırıcı A, Acar İ, Kalmer A, Uzun Y. Morphological and Molecular Characterization of Hebeloma subtortum (Hymenogastraceae), a New Record Macrofungus from Bingöl Province, Turkey. Kastamonu University Journal of Forestry Faculty. 2019;19(1):1-10.

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