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A NEW MODEL ON BENTHIC FORAMINIFER IMAGE CLASSIFICATION AND DEFINITIONS BASED ON CONVENTIONAL NEURAL NETWORK (CNN)

Cilt: 31 Sayı: 1 29 Nisan 2023
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A NEW MODEL ON BENTHIC FORAMINIFER IMAGE CLASSIFICATION AND DEFINITIONS BASED ON CONVENTIONAL NEURAL NETWORK (CNN)

Abstract

Fossil studies are of great importance in order to observe the change of living species over the years, to make inferences by using the information provided by the observed species, and to understand the developing and changing structure of the world we live in over the years. However, the examination and interpretation of fossil specimens is a complex and long process. Artificial intelligence studies have begun to be applied to this field in order to facilitate the working methods of paleontologists. The detection and classification of fossil specimens with the aid of computers simplifies this process as much as possible compared to manual classification processes and reduces foreign dependency for fossil assemblages for which paleontologists are not experts. To achieve this, 9 benthic foraminiferal species and non-foraminiferal sample photographs from a selected dataset were used. In this study, a new method developed for the classification of benthic foraminifera using deep convolutional neural networks, reaching higher accuracy than the results in the literature, is presented. With this method, at least 70% accuracy rates were achieved in the test results of the trained system. This study, which reached high accuracy rates with a new method, has created a successful development for the branch of paleontology in the use of artificial intelligence in microfossil identification.

Keywords

Geology , Benthic Foraminifera , Classification , Deep Learning , Convolutional Neural Networks

Kaynakça

  1. Referans1: Carvalho, L. E., Fauth, G., Fauth, S. B., Krahl, G., Moreira, A. C., Fernandes, C. P., & Von Wangenheim, A. (2020). Automated microfossil identification and segmentation using a deep learning approach. Marine Micropaleontology, 158, 101890. doi:https://doi.org/10.1016/j.marmicro.2020.101890
  2. Referans2: Ge, Q., Zhong, B., Kanakiya, B., Mitra, R., Marchitto, T., & Lobaton, E. (2017, November). Coarse-to-fine foraminifera image segmentation through 3D and deep features. In 2017 IEEE Symposium series on computational intelligence (SSCI) (pp. 1-8). IEEE. doi: 10.1109/SSCI.2017.8280982
  3. Referans3: Gutiérrez Lira, E., Nouboud, F., Chalifour, A., & Voisin, Y. (2018, July). Image Segmentation and Object Extraction for Automatic Diatoms Classification. In International Conference on Image and Signal Processing (pp. 55-62). Springer, Cham. doi: https://doi.org/10.1007/978-3-319-94211-7_7 Referans4: Hu, Y., Limaye, A., & Lu, J. (2020). Three-dimensional segmentation of computed tomography data using Drishti Paint: new tools and developments. Royal Society open science, 7(12), 201033. doi: https://doi.org/10.1098/rsos.201033
  4. Referans5:Johansen, T. H., & Sørensen, S. A. (2020). Towards detection and classification of microscopic foraminifera using transfer learning. arXiv preprint arXiv:2001.04782. doi: https://doi.org/10.48550/arXiv.2001.04782
  5. Referans6: Marchant, R., Tetard, M., Pratiwi, A., Adebayo, M., & de Garidel-Thoron, T. (2020). Automated analysis of foraminifera fossil records by image classification using a convolutional neural network. Journal of Micropalaeontology, 39(2), 183-202. doi: https://doi.org/10.5194/jm-39-183-2020
  6. Referans7: Mitra, R., Marchitto, T. M., Ge, Q., Zhong, B., Kanakiya, B., Cook, M. S., ... & Lobaton, E. (2019). Automated species-level identification of planktic foraminifera using convolutional neural networks, with comparison to human performance. Marine Micropaleontology, 147, 16-24. doi: https://doi.org/10.1016/j.marmicro.2019.01.005
  7. Referans8: Pawlowski, J., Esling, P., Lejzerowicz, F., Cedhagen, T., & Wilding, T. A. (2014). Environmental monitoring through protist next‐generation sequencing metabarcoding: Assessing the impact of fish farming on benthic foraminifera communities. Molecular ecology resources, 14(6), 1129-1140. doi: https://doi.org/10.1111/1755-0998.12261
  8. Referans9: Platon, E., & Gupta, B. K. S. 2001. Benthic Foraminiferal Communities in Oxygen‐Depleted Environments of the Louisiana Continental Shelf. Coastal hypoxia: consequences for living resources and ecosystems, 58, 147-163. doi: https://doi.org/10.1029/CE058p0147
  9. Referans10: Sakınç M. 2008. Marmara Denizi BentikForaminiferleri: Sistemaik ve Otoekoloji [Benthic Foraminifers of the Sea of Marmara: Systemic and Autoecology. Istanbul Technical University] . İstanbul Teknik Üniversitesi. S.
  10. Referans11: Saraswati, P. K., & Srinivasan, M. S. 2015. Micropaleontology, Principles and applications. Springer.

Kaynak Göster

APA
Yayan, K., & Yayan, U. (2023). A NEW MODEL ON BENTHIC FORAMINIFER IMAGE CLASSIFICATION AND DEFINITIONS BASED ON CONVENTIONAL NEURAL NETWORK (CNN). Eskişehir Osmangazi Üniversitesi Mühendislik ve Mimarlık Fakültesi Dergisi, 31(1), 481-490. https://doi.org/10.31796/ogummf.1096951
AMA
1.Yayan K, Yayan U. A NEW MODEL ON BENTHIC FORAMINIFER IMAGE CLASSIFICATION AND DEFINITIONS BASED ON CONVENTIONAL NEURAL NETWORK (CNN). ESOGÜ Müh Mim Fak Derg. 2023;31(1):481-490. doi:10.31796/ogummf.1096951
Chicago
Yayan, Kübra, ve Uğur Yayan. 2023. “A NEW MODEL ON BENTHIC FORAMINIFER IMAGE CLASSIFICATION AND DEFINITIONS BASED ON CONVENTIONAL NEURAL NETWORK (CNN)”. Eskişehir Osmangazi Üniversitesi Mühendislik ve Mimarlık Fakültesi Dergisi 31 (1): 481-90. https://doi.org/10.31796/ogummf.1096951.
EndNote
Yayan K, Yayan U (01 Nisan 2023) A NEW MODEL ON BENTHIC FORAMINIFER IMAGE CLASSIFICATION AND DEFINITIONS BASED ON CONVENTIONAL NEURAL NETWORK (CNN). Eskişehir Osmangazi Üniversitesi Mühendislik ve Mimarlık Fakültesi Dergisi 31 1 481–490.
IEEE
[1]K. Yayan ve U. Yayan, “A NEW MODEL ON BENTHIC FORAMINIFER IMAGE CLASSIFICATION AND DEFINITIONS BASED ON CONVENTIONAL NEURAL NETWORK (CNN)”, ESOGÜ Müh Mim Fak Derg, c. 31, sy 1, ss. 481–490, Nis. 2023, doi: 10.31796/ogummf.1096951.
ISNAD
Yayan, Kübra - Yayan, Uğur. “A NEW MODEL ON BENTHIC FORAMINIFER IMAGE CLASSIFICATION AND DEFINITIONS BASED ON CONVENTIONAL NEURAL NETWORK (CNN)”. Eskişehir Osmangazi Üniversitesi Mühendislik ve Mimarlık Fakültesi Dergisi 31/1 (01 Nisan 2023): 481-490. https://doi.org/10.31796/ogummf.1096951.
JAMA
1.Yayan K, Yayan U. A NEW MODEL ON BENTHIC FORAMINIFER IMAGE CLASSIFICATION AND DEFINITIONS BASED ON CONVENTIONAL NEURAL NETWORK (CNN). ESOGÜ Müh Mim Fak Derg. 2023;31:481–490.
MLA
Yayan, Kübra, ve Uğur Yayan. “A NEW MODEL ON BENTHIC FORAMINIFER IMAGE CLASSIFICATION AND DEFINITIONS BASED ON CONVENTIONAL NEURAL NETWORK (CNN)”. Eskişehir Osmangazi Üniversitesi Mühendislik ve Mimarlık Fakültesi Dergisi, c. 31, sy 1, Nisan 2023, ss. 481-90, doi:10.31796/ogummf.1096951.
Vancouver
1.Kübra Yayan, Uğur Yayan. A NEW MODEL ON BENTHIC FORAMINIFER IMAGE CLASSIFICATION AND DEFINITIONS BASED ON CONVENTIONAL NEURAL NETWORK (CNN). ESOGÜ Müh Mim Fak Derg. 01 Nisan 2023;31(1):481-90. doi:10.31796/ogummf.1096951