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New Generation Genome Editing Techniques: ZFNs, TALENs, CRISPRs and Their Usage in Plant Research

Yıl 2017, Cilt: 26 Sayı: 1, 111 - 126, 29.06.2017
https://doi.org/10.21566/tarbitderg.323614

Öz



ZFNs, TALENs and
CRISPRs are the new generation genome editing tools functioning by binding a
specified target region on DNA. Using one of these techniques, target genes
could be edited by insertion/deletions. It is also possible to replace
nucleotides in target genes via homologous recombination. Compared to the
current methods, new generation genome editing is faster, easier, more
efficient and less expensive. This review covers how and where new generation
genome editing techniques can be used, comparison one to another, and
highlights applications in plant genetic engineering and plant breeding.
Furthermore, the release of genome edited plants to the environment and current
regulations in the world are discussed. It is predicted that improvements in
binding and excising efficacy of new generation genome editing techniques would
take the current research one step further, and would be a major aid to plant
breeding that would lead to generating crop varieties with higher yield,
quality and tolerance to biotic and abiotic stresses.

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Yeni Nesil Genom Düzenleme Teknikleri: ZFN, TALEN, CRISPR’lar ve Bitkilerde Kullanımı

Yıl 2017, Cilt: 26 Sayı: 1, 111 - 126, 29.06.2017
https://doi.org/10.21566/tarbitderg.323614

Öz



ZFN, TALEN ve CRISPR’lar
DNA’da hedeflenen bölgeye bağlanabilmeleri sayesinde genomda düzenleme yapmaya imkân
veren yeni nesil genom düzenleme teknikleridir. Bu tekniklerin kullanımı sayesinde
hedef genler mutasyona uğratılarak ya da genomdan kesilerek susturulabilmekte, ayrıca
genlerde istenilen nükleotidlerin değiştirilmesi de mümkün olabilmektedir. Yapılan
genom düzenlemeleri hâlihazırda kullanılan metotlara kıyasla daha hızlı, daha kolay,
etkin ve ucuzdur. Bu makalede yeni nesil genom düzenleme tekniklerinin çalışma
prensipleri, kullanıldıkları alanlar, tekniklerin birbirleriyle kıyaslanması ve
bu teknikler kullanılarak genetik mühendisliği ve ıslahı alanında şu ana kadar yapılmış
çalışmalara yer verilmiştir. Makalenin son bölümünde bu tekniklerle yapılan
düzenlemeler sonucunda elde edilen bitkilerin doğaya salınımı ve bu konuda mevcut
düzenlemelere de değinilmiştir. Yeni nesil genom düzenleme tekniklerinin bağlanma
ve kesim etkinliklerinin artırılması mevcut çalışmaları bir adım daha ileriye taşıyarak,
daha verimli, kaliteli ve çevresel faktörlere karşı toleranslı çeşitlerin
geliştirilmesine imkân tanıyacaktır.

Kaynakça

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  • Wolt J.D., Wang K. and Yang B., 2016. The Regulatory Status of Genome-edited Crops. Plant Biotechnology Journal 14(2):510-518
  • Woo J.W., Kim J., Kwon S., Corvalán C., Cho S.W., Kim H., Kim S.G., Kim S.T., Choe S. and Kim J.S., 2015. DNA-free genome editing in plants with preassembled CRISPR-Cas9 ribonucleoproteins. Nature Biotechnology, 33(11):1162-1164. (DOI: 10.1038/nbt.3389)
  • Wu J., Kandavelou K. and Chandrasegaran S., 2007. Custom-designed zinc finger nucleases: What is next? Cellular and Molecular Life Sciences, 64(22):2933-2944
  • Xing H.L., Dong L., Wang Z.P., Zhang H.Y., Han C.Y., Liu B, Wang X.C. and Chen QJ., 2014. A CRISPR/Cas9 toolkit for multiplex genome editing in plants. BMC Plant Biology, 14.1 (2014): 327(DOI: 10.1186/s12870-014-0327-y)
  • Zhang B., Yang X., Yang C.P, Li M.Y. and Guo Y.L., 2016a. Exploiting the CRISPR/Cas9 System for Targeted Genome Mutagenesis in Petunia. Scientific Reports 6 Article number: 20315 (DIO: doi:10.1038/srep20315)
  • Zhang D.D., Li Z.X. and Li J.F., 2016b. Targeted Gene Manipulation in Plants Using the CRISPR/Cas Technology. Journal of Genetics and Genomics, 43(5):251-62
  • Zhang H., Zhang J.S., Wei P.L., Zhang B.T., Gou F., Feng Z.Y., Mao Y., Yang L., Zhang H., Xu N. and Zhu J.K., 2014. The CRISPR/Cas9 system produces specific and homozygous targeted gene editing in rice in one generation. Plant Biotechnology Journal, 12(6):797-807 (DOI: 10.1111/pbi.12200)
  • Zhang Y., Liang Z., Zong Y., Wang YP., Liu JX., Chen K.L., Chen, Qiu J.L. and Gao C., 2016c. Efficient and transgene-free genome editing in wheat through transient expression of CRISPR/Cas9 DNA or RNA. Nature Communications, 7 Article number: 12617 (DOI: 10.1038/ncomms12617)
  • Zhang Z.J., Mao Y.F., Ha S., Liu W.S., Botella J.R. and Zhu J.K., 2016d. A multiplex CRISPR/Cas9 platform for fast and efficient editing of multiple genes in Arabidopsis. Plant Cell Reports 35(7):1519-1533
  • Zhou H.B., Liu B., Weeks D.P., Spalding M.H. and Yang B., 2014. Large chromosomal deletions and heritable small genetic changes induced by CRISPR/Cas9 in rice. Nucleic Acids Research 42(17):10903-10914
Toplam 103 adet kaynakça vardır.

Ayrıntılar

Birincil Dil Türkçe
Bölüm Makaleler
Yazarlar

M. Aydın Akbudak

Kübra Kontbay Bu kişi benim

Yayımlanma Tarihi 29 Haziran 2017
Yayımlandığı Sayı Yıl 2017 Cilt: 26 Sayı: 1

Kaynak Göster

APA Akbudak, M. A., & Kontbay, K. (2017). Yeni Nesil Genom Düzenleme Teknikleri: ZFN, TALEN, CRISPR’lar ve Bitkilerde Kullanımı. Tarla Bitkileri Merkez Araştırma Enstitüsü Dergisi, 26(1), 111-126. https://doi.org/10.21566/tarbitderg.323614
AMA Akbudak MA, Kontbay K. Yeni Nesil Genom Düzenleme Teknikleri: ZFN, TALEN, CRISPR’lar ve Bitkilerde Kullanımı. Tarla Bitkileri Merkez Araştırma Enstitüsü Dergisi. Haziran 2017;26(1):111-126. doi:10.21566/tarbitderg.323614
Chicago Akbudak, M. Aydın, ve Kübra Kontbay. “Yeni Nesil Genom Düzenleme Teknikleri: ZFN, TALEN, CRISPR’lar Ve Bitkilerde Kullanımı”. Tarla Bitkileri Merkez Araştırma Enstitüsü Dergisi 26, sy. 1 (Haziran 2017): 111-26. https://doi.org/10.21566/tarbitderg.323614.
EndNote Akbudak MA, Kontbay K (01 Haziran 2017) Yeni Nesil Genom Düzenleme Teknikleri: ZFN, TALEN, CRISPR’lar ve Bitkilerde Kullanımı. Tarla Bitkileri Merkez Araştırma Enstitüsü Dergisi 26 1 111–126.
IEEE M. A. Akbudak ve K. Kontbay, “Yeni Nesil Genom Düzenleme Teknikleri: ZFN, TALEN, CRISPR’lar ve Bitkilerde Kullanımı”, Tarla Bitkileri Merkez Araştırma Enstitüsü Dergisi, c. 26, sy. 1, ss. 111–126, 2017, doi: 10.21566/tarbitderg.323614.
ISNAD Akbudak, M. Aydın - Kontbay, Kübra. “Yeni Nesil Genom Düzenleme Teknikleri: ZFN, TALEN, CRISPR’lar Ve Bitkilerde Kullanımı”. Tarla Bitkileri Merkez Araştırma Enstitüsü Dergisi 26/1 (Haziran 2017), 111-126. https://doi.org/10.21566/tarbitderg.323614.
JAMA Akbudak MA, Kontbay K. Yeni Nesil Genom Düzenleme Teknikleri: ZFN, TALEN, CRISPR’lar ve Bitkilerde Kullanımı. Tarla Bitkileri Merkez Araştırma Enstitüsü Dergisi. 2017;26:111–126.
MLA Akbudak, M. Aydın ve Kübra Kontbay. “Yeni Nesil Genom Düzenleme Teknikleri: ZFN, TALEN, CRISPR’lar Ve Bitkilerde Kullanımı”. Tarla Bitkileri Merkez Araştırma Enstitüsü Dergisi, c. 26, sy. 1, 2017, ss. 111-26, doi:10.21566/tarbitderg.323614.
Vancouver Akbudak MA, Kontbay K. Yeni Nesil Genom Düzenleme Teknikleri: ZFN, TALEN, CRISPR’lar ve Bitkilerde Kullanımı. Tarla Bitkileri Merkez Araştırma Enstitüsü Dergisi. 2017;26(1):111-26.