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Akrilik Asit Moleküllerinin Kimyasal Reaktivitesinin Teorik İncelenmesi: STO-3G Temel Seti Kullanılarak UV-Vis, NMR ve FT-IR Spektroskopisi ile Bir DFT Çalışması

Yıl 2024, Cilt: 29 Sayı: 2, 438 - 446, 31.08.2024
https://doi.org/10.53433/yyufbed.1350755

Öz

Bu yazıda, akrilik asidin moleküler özelliklerini hesaplamak için kuantum hesaplamalı kimya yöntemleri çalışılmıştır. Yoğunluk Fonksiyonel Teorisi (DFT), akrilik asidin sınır orbitallerinin en yüksek dolu moleküler orbital (HOMO) ve en düşük boş moleküler orbital (LUMO) enerji seviyelerini hesaplamak için STO-3G temel setinde molekülü optimize etmek için kullanılmıştır. HOMO-LUMO orbitalleri arasındaki enerji aralığı 5.545 eV olarak hesaplanmıştır. Bu, enerji aralığının molekülün kimyasal aktivitesini yansıttığını göstermiştir. Bileşik; UV-Görünür, Nükleer Manyetik Rezonans (NMR) ve Fourier Dönüşümü Kızılötesi (FT-IR) spektroskopi yöntemleri ile karakterize edilmiştir.

Kaynakça

  • Abdel-baset, H. M. (2023). Electronic structure and stability of a pure sodium alanate clusters Na12Al12H48, and the interstitial space-doped with Ti, C and H atoms, as a promising hydrogen storage system: Density functional theory. International Journal of Hydrogen Energy, 48(53), 20430-20440. https://doi.org/10.1016/j.ijhydene.2023.03.023
  • Bibi, S., Urrehman, S., Khalid,L., Yaseen, M., Khan, A. Q., & Jia, R. (2021). Metal doped fullerene complexes as promising drug delivery materials against COVID-19. Chemical Papers, 75, 6487-6497. https://doi.org/10.1007/s11696-021-01815-4
  • Çakmak, R., Başaran, E., Kaya, S., & Erkan, S. (2022). Synthesis, spectral characterization, chemical reactivity and anticancer behaviors of some novel hydrazone derivatives: Experimental and theoretical insights. Journal of Molecular Structure, 1253, 132224. https://doi.org/10.1016/j.molstruc.2021.132224
  • Çiftci, E., Ata, A. Ç., Yıldıko, Ü., & Çakmak, İ. (2020). Spectroscopic comparison of 4-Isopropyl-N, N-Bis (4-Azidophenyl) Aniline molecule (IPAPA): DFT and MEP Analysis. Journal of the Institute of Science and Technology, 10(3), 1799-1810. https://doi.org/10.21597/jist.687723
  • Diomande, S., & Kone, S. (2019). Lipophilicity and QSAR study of a series of makaluvamines by the method of the density functional theory: B3LYP/6-311++G(d,p). Journal of Materials Physics and Chemistry, 7(1), 20-28.
  • Frau, J., Muñoz, F., & Glossman-Mitnik, D. (2017). Application of DFT concepts to the study of the chemical reactivity of some resveratrol derivatives through the assessment of the validity of the “Koopmans in DFT” (KID) procedure. Journal of Theoretical and Computational Chemistry, 16 (01), 1750006. https://doi.org/10.1142/S0219633617500067
  • Griffiths, P. R., & de Haseth, J. A. (1986). Fourier Transform Infrared Spectroscopy, Vol. 83 aus der Reihe: Chemical Analysis—A Series of Monographs of Analytical Chemistry and Its Applications. John Wiley Sons. https://doi.org/10.1002/bbpc.19860901224
  • Issaoui, N., Ghalla, H., Bardak, F., Karabacak, M., Dlala, N. A., Flakus, H. T., & Oujia, B. (2017). Combined experimental and theoretical studies on the molecular structures, spectroscopy, and inhibitor activity of 3-(2-thienyl) acrylic acid through AIM, NBO, FT-IR, FT-Raman, UV and HOMO-LUMO analyses, and molecular docking. Journal of Molecular Structure, 1130, 659-668. https://doi.org/10.1016/j.molstruc.2016.11.019
  • Kanmazalp, S. D. (2017). Investigation of theoretical calculations of 2-(1-Phenylethylideneamino) guanidine compound: NBO, NLO, HOMO-LUMO and MEP analysis by DFT Method. Karaelmas Science and Engineering Journal, 7(2), 491-496.
  • Khoshhesab, Z. M. (2012). Reflectance IR Spectroscopy. In: T. Theophanides (Ed.), Infrared Spectroscopy - Materials Science, Engineering and Technology, (pp. 233e44). InTech. https://doi.org/10.5772/37180
  • Messick, T. E., Russell, N. S., Iwata, A. J., Sarachan, K. L., Shiekhattar, R., Shanks, J. R., ..., & Marmorstein, R. (2008). Structural basis for ubiquitin recognition by the Otu1 ovarian tumor domain protein. Journal of Biological Chemistry, 283(16), 11038-11049. https://doi.org/10.1074/jbc.M704398200
  • Mohamed, M. A., Salleh, W. N. W., Jaafar, J., Ismail, A. F., Abd. Mutalib, M., & Jamil, S. M. (2015). Feasibility of recycled newspaper as cellulose source for regenerated cellulose membrane fabrication. Journal of Applied Polymer Science, 132, (43). https://doi.org/10.1002/app.42684
  • Mohamed, M. A., Salleh, W. N. W., Jaafar, J., Hir, Z. A. M., Rosmi, M. S., Mutalib, M. A., ..., & Tanemura, M. (2016). Regenerated cellulose membrane as bio-template for in-situ growth of visible-light driven C-modified mesoporous titania. Carbohydrate Polymers, 146, 166-173. https://doi.org/10.1016/j.carbpol.2016.03.050
  • Muz, İ., & Kurban, M. (2019). Enhancement of electronic, photophysical and optical properties of 5,5’ -Dibromo-2,2’ -bithiophene molecule: new aspect to molecular design. Opto-Electronics Review, 27, 113-118. https://doi.org/10.1016/j.opelre.2019.03.002
  • Muz, İ., & Kurban, M. (2020). Electronic transport and non-linear optical properties of hexathiopentacene (HTP) nanorings: A DFT study. Journal of Electronıc Materials, 49(5), 3282-3289. https://doi.org/10.1007/s11664-020-08017-w
  • Naganandhini, S. P., Sangeetha, T., Sahana, R., Mounica, P., Rajmohan, G., Dineshkumar, P., & Arivazhagan, G. (2022). Theoretical discussion on the hydrogen bond ınteractions between Acrylic Acid dimer and dibutyl ether Monomer. Computational and Theoretical Chemistry, 1213, 113746. https://doi.org/10.1016/j.comptc.2022.113746
  • O'boyle, N. M., Tenderholt, A. L., & Langner, K. M. (2008). Cclib: a library for package‐independent computational chemistry algorithms. Journal of Computational Chemistry, 29(5), 839-845. https://doi.org/10.1002/jcc.20823
  • Odujole, J. I., & Desai, S. (2020). Molecular dynamics simulations of PAA as resist for nanoimprint lithography. In L. Cromarty, R. Shirwaiker, P. Wang (Eds.), Proceedings of the 2020 IIE Annual Conference (pp. 221-226). Institute of Industrial and Systems Engineers (IISE).
  • Parr, R. G., & Yang, W. J. (1984). Density functional approach to the frontier-electron theory of chemical reactivity. Journal of the American Chemical Society, 106, 511-516. https://doi.org/10.1021/ja00326a036
  • Pavia, D. L., Lampman G. M., & Kriz, G.S. (2001). Introduction to Spectroscopy. 3rd ed. USA: Thomson Learning, Inc.
  • Qiu, L., Levine, K., Gajiwala, K. S., Cronin, C. N., Nagata, A., Johnson, E., ... & Sun, S. (2018). Small molecule inhibitors reveal PTK6 kinase is not an oncogenic driver in breast cancers. PLoS One, 13(6), e0198374. https://doi.org/10.1371/journal.pone.0198374
  • Schmid, F. X. (2001). Biological Macromolecules: UV-visible Spectrophotometry. In Encyclopedia of Life Sciences. https://doi.org/10.1038/npg.els.0003142
  • Singh, M. K., & Singh, A. (2022). Chapter 14 - Nuclear magnetic resonance spectroscopy. In M. K. Singh & A. Singh (Eds.), Characterization of Polymers and Fibres (pp. 321–339). Woodhead Publishing. https://doi.org/10.1016/B978-0-12-823986-5.00011-7
  • Smith, B. (2006). Fundamentals of Fourier Transform Infrared Spectroscopy. USA: CRC Press Taylor & Francis Group.
  • Sucheta, M., Pramod, A. G., Zikriya, M., Salma, K. M., Venugopal, N., Chaithra, R., ..., & Murthy, S. (2022). Frontier molecular orbital, molecular structure and Thermal properties of 2, 4, 6, 8-tetramethyl-2, 3, 6, 7-tetrahydro-s-indacene-1, 5-dione using DFT calculation. Materials Today: Proceedings, 62, 5241-5244. https://doi.org/10.1016/j.matpr.2022.03.215
  • Tanış, E. (2022a). Study of electronic, optoelectronic and photonic properties of NBB material in solvent environments. Journal of Electronic Materials, 51, 4978-4985. https://doi.org/10.1007/s11664-022-09730-4
  • Tanış, E. (2022b). New optoelectronic material based on biguanide for orange and yellow organic light emitting diode: A combined experimental and theoretical study. Journal of Molecular Liquids, 358, 119161. https://doi.org/10.1016/j.molliq.2022.119161
  • Tanış, E. (2022c). A study of silicon and germanium-based molecules in terms of solar cell devices performance. Turkish Journal of Chemistry, 46, 1607-1619. https://doi.org/10.55730/1300-0527.3464
  • Zhang, H., Brown, K. D., Lowe, S. P., Liu, G. S., Steele, D., Abberton, K., & Daniell, M. (2014). Acrylic acid surface-modified contact lens for the culture of limbal stem cells. Tissue Engineering Part A, 20(11-12), 1593-1602. https://doi.org/10.1089/ten.tea.2013.0320

Theoretical Investigation of the Chemical Reactivity of Acrylic Acid Molecules: A DFT Study with UV-Vis, NMR, and FT-IR Spectroscopy Using STO-3G Basis Set

Yıl 2024, Cilt: 29 Sayı: 2, 438 - 446, 31.08.2024
https://doi.org/10.53433/yyufbed.1350755

Öz

In this paper, quantum computational chemistry methods were employed to calculate the molecular characteristics of acrylic acid. Density Functional Theory (DFT) was used to optimize the molecule at the STO-3G basis set to calculate the highest occupied molecular orbital (HOMO) and lowest unoccupied molecular orbital (LUMO) energy levels of the frontier orbitals of acrylic acid. The energy gap between HOMO-LUMO orbitals was calculated to be 5.545 eV. This demonstrated that the energy gap reflects the chemical activity of the molecule. The compound was characterized by UV-Visible, Nuclear Magnetic Resonance (NMR), and Fourier Transform Infrared (FT-IR) spectroscopy methods.

Kaynakça

  • Abdel-baset, H. M. (2023). Electronic structure and stability of a pure sodium alanate clusters Na12Al12H48, and the interstitial space-doped with Ti, C and H atoms, as a promising hydrogen storage system: Density functional theory. International Journal of Hydrogen Energy, 48(53), 20430-20440. https://doi.org/10.1016/j.ijhydene.2023.03.023
  • Bibi, S., Urrehman, S., Khalid,L., Yaseen, M., Khan, A. Q., & Jia, R. (2021). Metal doped fullerene complexes as promising drug delivery materials against COVID-19. Chemical Papers, 75, 6487-6497. https://doi.org/10.1007/s11696-021-01815-4
  • Çakmak, R., Başaran, E., Kaya, S., & Erkan, S. (2022). Synthesis, spectral characterization, chemical reactivity and anticancer behaviors of some novel hydrazone derivatives: Experimental and theoretical insights. Journal of Molecular Structure, 1253, 132224. https://doi.org/10.1016/j.molstruc.2021.132224
  • Çiftci, E., Ata, A. Ç., Yıldıko, Ü., & Çakmak, İ. (2020). Spectroscopic comparison of 4-Isopropyl-N, N-Bis (4-Azidophenyl) Aniline molecule (IPAPA): DFT and MEP Analysis. Journal of the Institute of Science and Technology, 10(3), 1799-1810. https://doi.org/10.21597/jist.687723
  • Diomande, S., & Kone, S. (2019). Lipophilicity and QSAR study of a series of makaluvamines by the method of the density functional theory: B3LYP/6-311++G(d,p). Journal of Materials Physics and Chemistry, 7(1), 20-28.
  • Frau, J., Muñoz, F., & Glossman-Mitnik, D. (2017). Application of DFT concepts to the study of the chemical reactivity of some resveratrol derivatives through the assessment of the validity of the “Koopmans in DFT” (KID) procedure. Journal of Theoretical and Computational Chemistry, 16 (01), 1750006. https://doi.org/10.1142/S0219633617500067
  • Griffiths, P. R., & de Haseth, J. A. (1986). Fourier Transform Infrared Spectroscopy, Vol. 83 aus der Reihe: Chemical Analysis—A Series of Monographs of Analytical Chemistry and Its Applications. John Wiley Sons. https://doi.org/10.1002/bbpc.19860901224
  • Issaoui, N., Ghalla, H., Bardak, F., Karabacak, M., Dlala, N. A., Flakus, H. T., & Oujia, B. (2017). Combined experimental and theoretical studies on the molecular structures, spectroscopy, and inhibitor activity of 3-(2-thienyl) acrylic acid through AIM, NBO, FT-IR, FT-Raman, UV and HOMO-LUMO analyses, and molecular docking. Journal of Molecular Structure, 1130, 659-668. https://doi.org/10.1016/j.molstruc.2016.11.019
  • Kanmazalp, S. D. (2017). Investigation of theoretical calculations of 2-(1-Phenylethylideneamino) guanidine compound: NBO, NLO, HOMO-LUMO and MEP analysis by DFT Method. Karaelmas Science and Engineering Journal, 7(2), 491-496.
  • Khoshhesab, Z. M. (2012). Reflectance IR Spectroscopy. In: T. Theophanides (Ed.), Infrared Spectroscopy - Materials Science, Engineering and Technology, (pp. 233e44). InTech. https://doi.org/10.5772/37180
  • Messick, T. E., Russell, N. S., Iwata, A. J., Sarachan, K. L., Shiekhattar, R., Shanks, J. R., ..., & Marmorstein, R. (2008). Structural basis for ubiquitin recognition by the Otu1 ovarian tumor domain protein. Journal of Biological Chemistry, 283(16), 11038-11049. https://doi.org/10.1074/jbc.M704398200
  • Mohamed, M. A., Salleh, W. N. W., Jaafar, J., Ismail, A. F., Abd. Mutalib, M., & Jamil, S. M. (2015). Feasibility of recycled newspaper as cellulose source for regenerated cellulose membrane fabrication. Journal of Applied Polymer Science, 132, (43). https://doi.org/10.1002/app.42684
  • Mohamed, M. A., Salleh, W. N. W., Jaafar, J., Hir, Z. A. M., Rosmi, M. S., Mutalib, M. A., ..., & Tanemura, M. (2016). Regenerated cellulose membrane as bio-template for in-situ growth of visible-light driven C-modified mesoporous titania. Carbohydrate Polymers, 146, 166-173. https://doi.org/10.1016/j.carbpol.2016.03.050
  • Muz, İ., & Kurban, M. (2019). Enhancement of electronic, photophysical and optical properties of 5,5’ -Dibromo-2,2’ -bithiophene molecule: new aspect to molecular design. Opto-Electronics Review, 27, 113-118. https://doi.org/10.1016/j.opelre.2019.03.002
  • Muz, İ., & Kurban, M. (2020). Electronic transport and non-linear optical properties of hexathiopentacene (HTP) nanorings: A DFT study. Journal of Electronıc Materials, 49(5), 3282-3289. https://doi.org/10.1007/s11664-020-08017-w
  • Naganandhini, S. P., Sangeetha, T., Sahana, R., Mounica, P., Rajmohan, G., Dineshkumar, P., & Arivazhagan, G. (2022). Theoretical discussion on the hydrogen bond ınteractions between Acrylic Acid dimer and dibutyl ether Monomer. Computational and Theoretical Chemistry, 1213, 113746. https://doi.org/10.1016/j.comptc.2022.113746
  • O'boyle, N. M., Tenderholt, A. L., & Langner, K. M. (2008). Cclib: a library for package‐independent computational chemistry algorithms. Journal of Computational Chemistry, 29(5), 839-845. https://doi.org/10.1002/jcc.20823
  • Odujole, J. I., & Desai, S. (2020). Molecular dynamics simulations of PAA as resist for nanoimprint lithography. In L. Cromarty, R. Shirwaiker, P. Wang (Eds.), Proceedings of the 2020 IIE Annual Conference (pp. 221-226). Institute of Industrial and Systems Engineers (IISE).
  • Parr, R. G., & Yang, W. J. (1984). Density functional approach to the frontier-electron theory of chemical reactivity. Journal of the American Chemical Society, 106, 511-516. https://doi.org/10.1021/ja00326a036
  • Pavia, D. L., Lampman G. M., & Kriz, G.S. (2001). Introduction to Spectroscopy. 3rd ed. USA: Thomson Learning, Inc.
  • Qiu, L., Levine, K., Gajiwala, K. S., Cronin, C. N., Nagata, A., Johnson, E., ... & Sun, S. (2018). Small molecule inhibitors reveal PTK6 kinase is not an oncogenic driver in breast cancers. PLoS One, 13(6), e0198374. https://doi.org/10.1371/journal.pone.0198374
  • Schmid, F. X. (2001). Biological Macromolecules: UV-visible Spectrophotometry. In Encyclopedia of Life Sciences. https://doi.org/10.1038/npg.els.0003142
  • Singh, M. K., & Singh, A. (2022). Chapter 14 - Nuclear magnetic resonance spectroscopy. In M. K. Singh & A. Singh (Eds.), Characterization of Polymers and Fibres (pp. 321–339). Woodhead Publishing. https://doi.org/10.1016/B978-0-12-823986-5.00011-7
  • Smith, B. (2006). Fundamentals of Fourier Transform Infrared Spectroscopy. USA: CRC Press Taylor & Francis Group.
  • Sucheta, M., Pramod, A. G., Zikriya, M., Salma, K. M., Venugopal, N., Chaithra, R., ..., & Murthy, S. (2022). Frontier molecular orbital, molecular structure and Thermal properties of 2, 4, 6, 8-tetramethyl-2, 3, 6, 7-tetrahydro-s-indacene-1, 5-dione using DFT calculation. Materials Today: Proceedings, 62, 5241-5244. https://doi.org/10.1016/j.matpr.2022.03.215
  • Tanış, E. (2022a). Study of electronic, optoelectronic and photonic properties of NBB material in solvent environments. Journal of Electronic Materials, 51, 4978-4985. https://doi.org/10.1007/s11664-022-09730-4
  • Tanış, E. (2022b). New optoelectronic material based on biguanide for orange and yellow organic light emitting diode: A combined experimental and theoretical study. Journal of Molecular Liquids, 358, 119161. https://doi.org/10.1016/j.molliq.2022.119161
  • Tanış, E. (2022c). A study of silicon and germanium-based molecules in terms of solar cell devices performance. Turkish Journal of Chemistry, 46, 1607-1619. https://doi.org/10.55730/1300-0527.3464
  • Zhang, H., Brown, K. D., Lowe, S. P., Liu, G. S., Steele, D., Abberton, K., & Daniell, M. (2014). Acrylic acid surface-modified contact lens for the culture of limbal stem cells. Tissue Engineering Part A, 20(11-12), 1593-1602. https://doi.org/10.1089/ten.tea.2013.0320
Toplam 29 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Konular Atom ve Molekül Fiziği
Bölüm Fen Bilimleri ve Matematik / Natural Sciences and Mathematics
Yazarlar

Fermin Ak 0000-0003-3238-4638

Mehmet Hanifi Kebiroglu 0000-0002-6764-3364

Yayımlanma Tarihi 31 Ağustos 2024
Gönderilme Tarihi 27 Ağustos 2023
Yayımlandığı Sayı Yıl 2024 Cilt: 29 Sayı: 2

Kaynak Göster

APA Ak, F., & Kebiroglu, M. H. (2024). Theoretical Investigation of the Chemical Reactivity of Acrylic Acid Molecules: A DFT Study with UV-Vis, NMR, and FT-IR Spectroscopy Using STO-3G Basis Set. Yüzüncü Yıl Üniversitesi Fen Bilimleri Enstitüsü Dergisi, 29(2), 438-446. https://doi.org/10.53433/yyufbed.1350755