Comparative genomics insight into phytopathogenic Xanthomonas arboricola pathovar corylina strains

Şafak Kalındamar

doi:10.35229/jaes.832315

EN TR

Comparative genomics insight into phytopathogenic Xanthomonas arboricola pathovar corylina strains

Abstract

Xanthomonas arboricola pathovar corylina (Xac) causes a bacterial blight disease resulting in economic losses in young hazelnut trees worldwide. Although virulent Xac genomes were sequenced, there is no comparative genomics study on these genomes. In this study, all publicly available whole-genome sequences of Xac were compared by a comparative genomics approach. The results showed that Xac CFBP1159 and Xac CFBP2565 genomes are phylogenetically related to each other based on the orthology results. The genomic diversification of Xac strains was depended on mobile genetic elements. Interestingly, Xac NCCB100457 genome had additional motility genes than Xac CFBP1159 and Xac CFBP2565 genomes. All Xac genomes had shared virulence-related genes such as secretion systems and adherence factors. The comparative genomics approach of this study supports that Xac genomes have slight genetic variations, and the virulence-related proteins interacted with the host proteins. This comparative genomics approach will provide insights into the understanding of the Xac genomes.

Keywords

Xanthomonas , comparative genomics , virulence , phytopathogenic , host-pathogen interaction , konak patojen ilişkisi

Fitopatojenik Xanthomonas arboricola pathovar corylina suşlarına karşılaştırmalı genomik bakış

Öz

Xanthomonas arboricola pathovar corylina (Xac), Dünya çapında genç fındık ağaçlarında ekonomik kayıplarla sonuçlanan fındık bakteriyel yanıklığı hastalığına neden olmaktadır. Virülent Xac suşlarının tüm genomları dizilenmiş olmasına rağmen, bu genomlar üzerinde bir karşılaştırmalı genomik çalışma henüz yoktur. Bu çalışmada, Xac suşlarının halka açık tüm genom dizileri, karşılaştırmalı genomik yaklaşım kullanılarak karşılaştırılmıştır. Elde edilen sonuçlarda, Xac CFBP1159 ve Xac CFBP2565 genomlarının, ortoloji sonucuna göre filogenetik olarak birbirleriyle daha yakın ilişkili olduğu saptanmıştır. Xac suşlarının genomik çeşitliliğinin mobil genetik elementlerle ilişkişi olduğu anlaşılmıştır. İlginç bir şekilde, Xac NCCB100457 genomu, Xac CFBP1159 ve Xac CFBP2565 genomlarından daha fazla motilite genlerine sahiptir. Tüm Xac genomları, sekresyon sistemleri ve adhezyon faktörleri gibi virülans ile ilgili ortak genlere sahiptir. Bu çalışmanın karşılaştırmalı genomik yaklaşımı, Xac genomlarının bazı genetik varyasyonlara sahip olduğu ve virülans ile ilgili proteinlerin konakçı proteinlerle etkileşime girdiğini desteklemektedir. Bu çalışmanın karşılaştırmalı genomik yaklaşımı, Xac genomlarının anlaşılması için bir öngörü sağlamıştır.

Anahtar Kelimeler

Xanthomonas , karşılaştırmalı genomik , virülans , bitki patojeni , konak patojen ilişkisi

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Details

Primary Language

English

Subjects

-

Journal Section

Research Article

Authors

Şafak Kalındamar ^*
0000-0003-2897-9911
Türkiye

Publication Date

March 31, 2021

Submission Date

November 27, 2020

Acceptance Date

February 1, 2021

Published in Issue

Year 2021 Volume: 6 Number: 1

DOI

https://doi.org/10.35229/jaes.832315

IZ

https://izlik.org/JA59TB24ZB

APA

Kalındamar, Ş. (2021). Comparative genomics insight into phytopathogenic Xanthomonas arboricola pathovar corylina strains. Journal of Anatolian Environmental and Animal Sciences, 6(1), 66-71. https://doi.org/10.35229/jaes.832315

Cited By

Xanthomonas arboricola pv. corylina (bacterial blight of hazelnut)

CABI Compendium

https://doi.org/10.1079/cabicompendium.56930

Önemli Bir Fitopatojen Bakteri Cinsi: Xanthomonas

Bursa Uludağ Üniversitesi Ziraat Fakültesi Dergisi

https://doi.org/10.20479/bursauludagziraat.1378147

EBSCOHost Scilit CABI

JAES/AAS-Journal of Anatolian Environmental and Animal Sciences/Anatolian Academic Sciences&Anadolu Çevre ve Hayvancılık Dergisi/Anadolu Akademik Bilimler-AÇEH/AAS