Yıl 2021, Cilt 6 , Sayı 1, Sayfalar 66 - 71 2021-03-31

Fitopatojenik Xanthomonas arboricola pathovar corylina suşlarına karşılaştırmalı genomik bakış
Comparative genomics insight into phytopathogenic Xanthomonas arboricola pathovar corylina strains

Şafak KALINDAMAR [1]


Xanthomonas arboricola pathovar corylina (Xac), Dünya çapında genç fındık ağaçlarında ekonomik kayıplarla sonuçlanan fındık bakteriyel yanıklığı hastalığına neden olmaktadır. Virülent Xac suşlarının tüm genomları dizilenmiş olmasına rağmen, bu genomlar üzerinde bir karşılaştırmalı genomik çalışma henüz yoktur. Bu çalışmada, Xac suşlarının halka açık tüm genom dizileri, karşılaştırmalı genomik yaklaşım kullanılarak karşılaştırılmıştır. Elde edilen sonuçlarda, Xac CFBP1159 ve Xac CFBP2565 genomlarının, ortoloji sonucuna göre filogenetik olarak birbirleriyle daha yakın ilişkili olduğu saptanmıştır. Xac suşlarının genomik çeşitliliğinin mobil genetik elementlerle ilişkişi olduğu anlaşılmıştır. İlginç bir şekilde, Xac NCCB100457 genomu, Xac CFBP1159 ve Xac CFBP2565 genomlarından daha fazla motilite genlerine sahiptir. Tüm Xac genomları, sekresyon sistemleri ve adhezyon faktörleri gibi virülans ile ilgili ortak genlere sahiptir. Bu çalışmanın karşılaştırmalı genomik yaklaşımı, Xac genomlarının bazı genetik varyasyonlara sahip olduğu ve virülans ile ilgili proteinlerin konakçı proteinlerle etkileşime girdiğini desteklemektedir. Bu çalışmanın karşılaştırmalı genomik yaklaşımı, Xac genomlarının anlaşılması için bir öngörü sağlamıştır.
Xanthomonas arboricola pathovar corylina (Xac) causes a bacterial blight disease resulting in economic losses in young hazelnut trees worldwide. Although virulent Xac genomes were sequenced, there is no comparative genomics study on these genomes. In this study, all publicly available whole-genome sequences of Xac were compared by a comparative genomics approach. The results showed that Xac CFBP1159 and Xac CFBP2565 genomes are phylogenetically related to each other based on the orthology results. The genomic diversification of Xac strains was depended on mobile genetic elements. Interestingly, Xac NCCB100457 genome had additional motility genes than Xac CFBP1159 and Xac CFBP2565 genomes. All Xac genomes had shared virulence-related genes such as secretion systems and adherence factors. The comparative genomics approach of this study supports that Xac genomes have slight genetic variations, and the virulence-related proteins interacted with the host proteins. This comparative genomics approach will provide insights into the understanding of the Xac genomes.
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Orcid: 0000-0003-2897-9911
Yazar: Şafak KALINDAMAR (Sorumlu Yazar)
Kurum: ORDU ÜNİVERSİTESİ, FEN-EDEBİYAT FAKÜLTESİ
Ülke: Turkey


Tarihler

Başvuru Tarihi : 27 Kasım 2020
Kabul Tarihi : 1 Şubat 2021
Yayımlanma Tarihi : 31 Mart 2021

Bibtex @araştırma makalesi { jaes832315, journal = {Journal of Anatolian Environmental and Animal Sciences}, issn = {}, eissn = {2548-0006}, address = {}, publisher = {Bülent VEREP}, year = {2021}, pages = {66 - 71}, doi = {10.35229/jaes.832315}, title = {Comparative genomics insight into phytopathogenic Xanthomonas arboricola pathovar corylina strains}, key = {cite}, author = {Kalındamar, Şafak} }
APA Kalındamar, Ş . (2021). Comparative genomics insight into phytopathogenic Xanthomonas arboricola pathovar corylina strains . Journal of Anatolian Environmental and Animal Sciences , 6 (1) , 66-71 . DOI: 10.35229/jaes.832315
MLA Kalındamar, Ş . "Comparative genomics insight into phytopathogenic Xanthomonas arboricola pathovar corylina strains" . Journal of Anatolian Environmental and Animal Sciences 6 (2021 ): 66-71 <https://dergipark.org.tr/tr/pub/jaes/article/832315>
Chicago Kalındamar, Ş . "Comparative genomics insight into phytopathogenic Xanthomonas arboricola pathovar corylina strains". Journal of Anatolian Environmental and Animal Sciences 6 (2021 ): 66-71
RIS TY - JOUR T1 - Comparative genomics insight into phytopathogenic Xanthomonas arboricola pathovar corylina strains AU - Şafak Kalındamar Y1 - 2021 PY - 2021 N1 - doi: 10.35229/jaes.832315 DO - 10.35229/jaes.832315 T2 - Journal of Anatolian Environmental and Animal Sciences JF - Journal JO - JOR SP - 66 EP - 71 VL - 6 IS - 1 SN - -2548-0006 M3 - doi: 10.35229/jaes.832315 UR - https://doi.org/10.35229/jaes.832315 Y2 - 2021 ER -
EndNote %0 Journal of Anatolian Environmental and Animal Sciences Comparative genomics insight into phytopathogenic Xanthomonas arboricola pathovar corylina strains %A Şafak Kalındamar %T Comparative genomics insight into phytopathogenic Xanthomonas arboricola pathovar corylina strains %D 2021 %J Journal of Anatolian Environmental and Animal Sciences %P -2548-0006 %V 6 %N 1 %R doi: 10.35229/jaes.832315 %U 10.35229/jaes.832315
ISNAD Kalındamar, Şafak . "Comparative genomics insight into phytopathogenic Xanthomonas arboricola pathovar corylina strains". Journal of Anatolian Environmental and Animal Sciences 6 / 1 (Mart 2021): 66-71 . https://doi.org/10.35229/jaes.832315
AMA Kalındamar Ş . Comparative genomics insight into phytopathogenic Xanthomonas arboricola pathovar corylina strains. JAES. 2021; 6(1): 66-71.
Vancouver Kalındamar Ş . Comparative genomics insight into phytopathogenic Xanthomonas arboricola pathovar corylina strains. Journal of Anatolian Environmental and Animal Sciences. 2021; 6(1): 66-71.
IEEE Ş. Kalındamar , "Comparative genomics insight into phytopathogenic Xanthomonas arboricola pathovar corylina strains", Journal of Anatolian Environmental and Animal Sciences, c. 6, sayı. 1, ss. 66-71, Mar. 2021, doi:10.35229/jaes.832315