Yıl 2021,
, 3128 - 3137, 15.12.2021
Doğan İlhan
,
Hatice Demir
Destekleyen Kurum
Kafkas Üniversitesi Bilimsel Araştırma Projeleri (BAP) Koordinatörlüğü
Proje Numarası
2018-FM-16
Kaynakça
- Abbasov M, Akparov Z, Gross T, Babayeva S, Izzatullayeva V, Hajiyev E, Rustamov K, Gross P, Tekin M, Akar T, Chao S, Brueggeman R, 2018. Genetic Relationship of Diploid Wheat (Triticum spp.) Species Assessed by SSR Markers. Genetic Resources and Crop Evolution; 65 (5): 1441-1453.
- Arystanbekkyzy M, Nadeem MA, Aktaş H, Yeken MZ, Zencirci N, Nawaz MA, Ali F, Haider MS, Tunc K, Chung G, Baloch FS, 2018. Phylogenetic and Taxonomic Relationship of Turkish Wild and Cultivated Emmer (Triticum turgidum ssp. dicoccoides) Revealed by IPBS-Retrotransposons Markers. International Journal of Agriculture and Biology, 21 (1): 155-163.
- Asmamaw M, Keneni G, Tesfaye K, 2019. Genetic Diversity of Ethiopian Durum Wheat (Triticum durum Desf.) Landrace Collections as Reveled by SSR Markers. Advances in Crop Science and Technology, 7: 413. Doi:10.4172/2329-8863.1000413.
- Demirel F, 2020. Genetic Diversity of Emmer Wheats Using IPBS-Retrotranspozon Markers. European Journal of Science and Technology No. 20, pp. 640-646.
- Demirel F, Gurcan K, Akar T, 2019. Clustering Analysis of Morphological and Phenological Data in Einkorn and Emmer Wheats Collected from Kastamonu Region. International Journal of Scientific and Technological Research, 5 (11): 25-36.
- Dhanavath S, Prasada Rao UJS, 2017. Nutritional and Nutraceutical Properties of Triticum dicoccum Wheat and Its Health Benefits: An Overview. Journal of Food Science, 82 (10): 2243-2250.
- Dong P, Wei Y-M, Chen G-Y, Li W, Wang J-R, Nevo E, Zheng Y-L, 2009. EST-SSR Diversity Correlated with Ecological and Genetic Factors of Wild Emmer Wheat in Israel. Hereditas 146: 1-10.
- Doyle JJ, Doyle JL, 1990. Isolation of Plant DNA from Fresh Tissue. Focus 12: 13–15.
- Ehtemam MH, Rahiminejad MR, Saeidi H, Tabatabaei BES, Krattinger SG, Keller B, 2010. Relationships among the A Genomes of Triticum L. Species as Evidenced by SSR Markers, in Iran. International Journal of Molecular Sciences, 11 (11): 4309-4325.
- Fahima T, Röder MS, Wendelhake K, Kirzhmer V, Nevo E, 2002. Microsatellite Polymorphism in Natural Populations of Wild Emmer Wheat, Triticum dicoccoides, Israel. Theoretical and Applied Genetics, 104: 17-29.
- Grover A, Sharma PC, 2015. Development and Use of Molecular Markers: Past and Present. Critical Reviews in Biotechnology, 36 (2): 290-302.
- Harlan JR, 1981. The Early History of Wheat: Earliest Traces to the Sack of Rome. In: Evans L.T. and Peacock W.J. (eds.), Wheat Science–Today and Tomorrow. Cambridge Press, 1–19.
- Huson DH, Rupp R, Scornavacca C, 2010. Phylogenetic Networks: Concepts, Algorithms and Applications. Cambridge University.
- İlhan D, Li X, Brummer C, Şakiroğlu M, 2016. Genetic Diversity and Population Structure of Tetraploid Accessions of the Medicago sativa-falcata Complex. Crop Science, 56: 1146-1156.
- Joshi SP, Gupta VS, Aggarwa RK, Ranjekar PK, Brar DS, 2000. Genetic Diversity and Phylogenetic Relationship as Revealed by Inter Simple Sequence Repeat (ISSR) Polymorphism in the Genus Oryza. Theoretical and Applied Genetics, 100: 1311–1320.
- Kacem NS, Muhovski Y, Djekoun A, Watillon B, 2017. Molecular Characterization of Genetic Variation in Soma Clones of Durum Wheat (Triticum durum Desf) Using SSR markers. European Scientific Journal, 13: 426-437.
- Kara K, Rached-Kanouni M, Mnasri S, Khammar H, Ben Naceur MB, 2020. Genetic Variability Assessment in Bread Wheat (Triticum aestivum) Grown in Algeria Using Microsatellites SSR Markers. Biodiversitas, 21: 2638-2644.
- Karagöz A, 1996. Agronomic Practices and Socioeconomic Aspects of Emmer and Einkorn Cultivation in Turkey. In: Padulosi S, Hammer K, Heller J (eds) Hulled Wheats, Promoting the Conservation and Used of Underutilized and Neglected Crops. IPGRI, Rome, pp 172–177.
- Karagöz A, 2014. Wheat Landraces of Turkey. Emirates Journal of Food and Agriculture, 26: 149–156.
- Khan MK, Pandey A, Thomas G, Akkaya MS, Kayis SA, Ozsensoy Y, Hamurcu M, Gezgin S, Topal A, Hakkı EE, 2015. Genetic Diversity and Population Structure of Wheat in India and Turkey. AoB PLANTS 7:plv083; doi:10.1093/aobpla/plv083.
- Kumar S, Kumar V, Kumari P, Singh AK, Singh R, 2016. DNA Fingerprinting and Genetic Diversity Studies in Wheat Genotypes Using SSR Markers. Journal of Environmental Biology, 37: 319-326.
- Liu J, Muse SV, 2005. PowerMarker: An Integrated Analysis Environment for Genetic Marker Analysis. Raleigh, NC: North Carolina State University, Bioindormatics Research Center, 21: 2128-2129.
- Madhumati B, 2014. Potential and Application of Molecular Markers Techniques for Plant Genome Analysis. International Journal of Pure & Applied Bioscience, 2 (1): 169-188.
- Mandal L, Verma Kumar S, Sasmal S, Katara J, 2018. Potential Applications of Molecular Markers in Plant. Curr Trends Biomedical Eng&Biosci., 12 (4).
- Nei M, Tajima F, Tateno Y, 1983. Accuracy of Estimated Phylogenetic Trees from Molecular Data. Journal of Molecular Evolution, 19: 153-170.
- Pagnotta MA, Mondini L, Codianni P, Fares C, 2009. Agronomical, Quality and Molecular Characterization of Twenty Italian Emmer Wheat (Triticum dicoccon) Accessions. Genetic Resources and Crop Evolution, 56: 299-310.
- Peakall R, Smouse PE, 2001. GenAlEx V6: Genetic Analysis in Excel Population Genetic Software for Teaching and Research. Australian National University, Canberra. http://wwwanueduau/BoZo/ GenAlE.
- Peng JH, Sun D, Nevo E, 2011a. Will Emmer Wheat, Triticum dicoccoides, Occupies A Pivotal Position in Wheat Domestication Process. Australian Journal of Crop Science; 5 (9): 1127-1143.
- Perrino P, Hammer K, 1982. Triticum monococcum L. and T. dicoccum S. are stil Cultivated in Italy. Genetica Agraria, 36: 303-311.
- Rafeipour M, Mirzaghaderi G, Shaaf S, Badakhshan H, 2016. SSR Assessment of the Genetic Diversity of Emmer Wheat with Emphasis on Iranian Landraces (Triticum dicoccon Schrank). Genetic Resources and Crop Evolution, 63: 595-600.
- Ren J, Chen L, Sun D, You FM, Wang J, Peng Y, Nevo E, Beiles A, Sun D, Luo M-C, Peng J, 2013. SNP-Revealed Genetic Diversity in Wild Emmer Wheat Correlates with Ecological Factors. BMC Evolutionary Biology, 13 (1): 169.
- Röder MS, Korzun V, Wendehake K, Plaschke J, Tixier M-H, Leroy P, Ganal MW, 1998. A Microsatellite Map of Wheat. Genetics 149: 2007-2023.
- Salehi M, Arzani A, Talebi M, Rokhzadi A, 2018. Genetic Diversity of Wheat Wild Relatives Using SSR Markers. Genetika, 50 (1): 131-141.
- Salunkhe T, Tamhankar S, Tetali S, Zaharieva M, Bonnett D, Trethowan R, Misra S, 2013. Molecular Genetic Diversity Analysis in Emmer Wheat (Triticum dicoccon Schrank) from India. Genetic Resource and Crop Evolution, 60: 165-174.
- Sarkar S, Singh AM, Chakraborti M, Singh SK, Ahlawat AK, Singh GP, 2014. Analysis of Genetic Diversity among the Indian Bread Wheat Cultivars Using Microsatellite (SSR) Markers. Indian Journal Genetic, 74 (4): 502-505.
- Shizuka T, Mori N, Ozkan H, Ohta S, 2015. Chloroplast DNA Haplotype Variation within Two Natural Populations of Wild Emmer Wheat (Triticum turgidum ssp. dicoccoides) in Southern Turkey. Biotechnology&Biotechnological Equipment, 29 (3): 423-430.
- Tahır R, Abdul N, 2010. Germination Characteristics and Molecular Characterizations of Some Wheat Varieties in Sulaimanyah by SSR Marker. Turk Journal Biology, 34: 109-117.
- Verma SP, VN Pathak, OP Verma 2019. Interrelationship between Yield and Its Contributing Traits in Wheat (Triticum aestivum L). International Journal of Current Microbiology and Applied Science, 8 (2):3209-3215.
- Zaharieva M, Geleta AA, Al H, Satish CM, Monneveux P, 2010. Cultivated Emmer Wheat (Triticum dicoccon Schrank), An Old Crop with Promising Future. Genetic Resource and Crop Evolution, l57: 937-962.
- Zarei Abbasabad E, Mohammadi SA, Moghaddam M, Jalal Kamali MR, 2016. Analysis of Genetic Diversity, Population Structure and Linkage Disequilibrium in Iranian Wheat Landraces Using SSR Markers. Plant Genetic Resources, 1:1-8.
Phylogeographic Structure of Kars Emmer Wheat (Triticum dicoccum Schrank ex Schübl) in Turkey Explained by SSR Markers
Yıl 2021,
, 3128 - 3137, 15.12.2021
Doğan İlhan
,
Hatice Demir
Öz
Turkey has a role in the distribution of many plants across continents and it is the main center of wheat. Due to its climatic characteristics and geostrategic importance, Turkey also has important genetic resources for the cultivation and development for many local wheat varieties. Therefore, it is important to determine local wheat genotypes that can adapt to different ecological conditions in Turkey and define ones having high performance in terms of efficiency and quality characteristics to make them useful. Emmer wheat which is grown in and around Kars City in northeastern Anatolia region is seen as valuable. In the present study, the phylogeographic structure analyses of 10 emmer (Triticum dicoccum Schrank) wheat populations and 2 populations of cultivated wheat (Triticum aestivum) obtained from Kars region were made by Simple Sequence Repeats (SSR). Within the scope of the study, Principal Coordinates Analysis (PCoA), phylogenetic analysis, and genetic-geographic distance analysis were performed. 3 main groups of differentiation at the populations were supported by PCoA and phylogenetic analyses. The comparison between geographic and genetic distance matrices for all genotypes revealed a statistically negative correlation (R2=0.04). Emmer wheat is an important local genetic resource and the cultivation area in agriculture should be expanded and used in breeding studies. In addition, it has been determined that SSR markers can give more comprehensive results with higher numbers in wheat genotyping studies.
Proje Numarası
2018-FM-16
Kaynakça
- Abbasov M, Akparov Z, Gross T, Babayeva S, Izzatullayeva V, Hajiyev E, Rustamov K, Gross P, Tekin M, Akar T, Chao S, Brueggeman R, 2018. Genetic Relationship of Diploid Wheat (Triticum spp.) Species Assessed by SSR Markers. Genetic Resources and Crop Evolution; 65 (5): 1441-1453.
- Arystanbekkyzy M, Nadeem MA, Aktaş H, Yeken MZ, Zencirci N, Nawaz MA, Ali F, Haider MS, Tunc K, Chung G, Baloch FS, 2018. Phylogenetic and Taxonomic Relationship of Turkish Wild and Cultivated Emmer (Triticum turgidum ssp. dicoccoides) Revealed by IPBS-Retrotransposons Markers. International Journal of Agriculture and Biology, 21 (1): 155-163.
- Asmamaw M, Keneni G, Tesfaye K, 2019. Genetic Diversity of Ethiopian Durum Wheat (Triticum durum Desf.) Landrace Collections as Reveled by SSR Markers. Advances in Crop Science and Technology, 7: 413. Doi:10.4172/2329-8863.1000413.
- Demirel F, 2020. Genetic Diversity of Emmer Wheats Using IPBS-Retrotranspozon Markers. European Journal of Science and Technology No. 20, pp. 640-646.
- Demirel F, Gurcan K, Akar T, 2019. Clustering Analysis of Morphological and Phenological Data in Einkorn and Emmer Wheats Collected from Kastamonu Region. International Journal of Scientific and Technological Research, 5 (11): 25-36.
- Dhanavath S, Prasada Rao UJS, 2017. Nutritional and Nutraceutical Properties of Triticum dicoccum Wheat and Its Health Benefits: An Overview. Journal of Food Science, 82 (10): 2243-2250.
- Dong P, Wei Y-M, Chen G-Y, Li W, Wang J-R, Nevo E, Zheng Y-L, 2009. EST-SSR Diversity Correlated with Ecological and Genetic Factors of Wild Emmer Wheat in Israel. Hereditas 146: 1-10.
- Doyle JJ, Doyle JL, 1990. Isolation of Plant DNA from Fresh Tissue. Focus 12: 13–15.
- Ehtemam MH, Rahiminejad MR, Saeidi H, Tabatabaei BES, Krattinger SG, Keller B, 2010. Relationships among the A Genomes of Triticum L. Species as Evidenced by SSR Markers, in Iran. International Journal of Molecular Sciences, 11 (11): 4309-4325.
- Fahima T, Röder MS, Wendelhake K, Kirzhmer V, Nevo E, 2002. Microsatellite Polymorphism in Natural Populations of Wild Emmer Wheat, Triticum dicoccoides, Israel. Theoretical and Applied Genetics, 104: 17-29.
- Grover A, Sharma PC, 2015. Development and Use of Molecular Markers: Past and Present. Critical Reviews in Biotechnology, 36 (2): 290-302.
- Harlan JR, 1981. The Early History of Wheat: Earliest Traces to the Sack of Rome. In: Evans L.T. and Peacock W.J. (eds.), Wheat Science–Today and Tomorrow. Cambridge Press, 1–19.
- Huson DH, Rupp R, Scornavacca C, 2010. Phylogenetic Networks: Concepts, Algorithms and Applications. Cambridge University.
- İlhan D, Li X, Brummer C, Şakiroğlu M, 2016. Genetic Diversity and Population Structure of Tetraploid Accessions of the Medicago sativa-falcata Complex. Crop Science, 56: 1146-1156.
- Joshi SP, Gupta VS, Aggarwa RK, Ranjekar PK, Brar DS, 2000. Genetic Diversity and Phylogenetic Relationship as Revealed by Inter Simple Sequence Repeat (ISSR) Polymorphism in the Genus Oryza. Theoretical and Applied Genetics, 100: 1311–1320.
- Kacem NS, Muhovski Y, Djekoun A, Watillon B, 2017. Molecular Characterization of Genetic Variation in Soma Clones of Durum Wheat (Triticum durum Desf) Using SSR markers. European Scientific Journal, 13: 426-437.
- Kara K, Rached-Kanouni M, Mnasri S, Khammar H, Ben Naceur MB, 2020. Genetic Variability Assessment in Bread Wheat (Triticum aestivum) Grown in Algeria Using Microsatellites SSR Markers. Biodiversitas, 21: 2638-2644.
- Karagöz A, 1996. Agronomic Practices and Socioeconomic Aspects of Emmer and Einkorn Cultivation in Turkey. In: Padulosi S, Hammer K, Heller J (eds) Hulled Wheats, Promoting the Conservation and Used of Underutilized and Neglected Crops. IPGRI, Rome, pp 172–177.
- Karagöz A, 2014. Wheat Landraces of Turkey. Emirates Journal of Food and Agriculture, 26: 149–156.
- Khan MK, Pandey A, Thomas G, Akkaya MS, Kayis SA, Ozsensoy Y, Hamurcu M, Gezgin S, Topal A, Hakkı EE, 2015. Genetic Diversity and Population Structure of Wheat in India and Turkey. AoB PLANTS 7:plv083; doi:10.1093/aobpla/plv083.
- Kumar S, Kumar V, Kumari P, Singh AK, Singh R, 2016. DNA Fingerprinting and Genetic Diversity Studies in Wheat Genotypes Using SSR Markers. Journal of Environmental Biology, 37: 319-326.
- Liu J, Muse SV, 2005. PowerMarker: An Integrated Analysis Environment for Genetic Marker Analysis. Raleigh, NC: North Carolina State University, Bioindormatics Research Center, 21: 2128-2129.
- Madhumati B, 2014. Potential and Application of Molecular Markers Techniques for Plant Genome Analysis. International Journal of Pure & Applied Bioscience, 2 (1): 169-188.
- Mandal L, Verma Kumar S, Sasmal S, Katara J, 2018. Potential Applications of Molecular Markers in Plant. Curr Trends Biomedical Eng&Biosci., 12 (4).
- Nei M, Tajima F, Tateno Y, 1983. Accuracy of Estimated Phylogenetic Trees from Molecular Data. Journal of Molecular Evolution, 19: 153-170.
- Pagnotta MA, Mondini L, Codianni P, Fares C, 2009. Agronomical, Quality and Molecular Characterization of Twenty Italian Emmer Wheat (Triticum dicoccon) Accessions. Genetic Resources and Crop Evolution, 56: 299-310.
- Peakall R, Smouse PE, 2001. GenAlEx V6: Genetic Analysis in Excel Population Genetic Software for Teaching and Research. Australian National University, Canberra. http://wwwanueduau/BoZo/ GenAlE.
- Peng JH, Sun D, Nevo E, 2011a. Will Emmer Wheat, Triticum dicoccoides, Occupies A Pivotal Position in Wheat Domestication Process. Australian Journal of Crop Science; 5 (9): 1127-1143.
- Perrino P, Hammer K, 1982. Triticum monococcum L. and T. dicoccum S. are stil Cultivated in Italy. Genetica Agraria, 36: 303-311.
- Rafeipour M, Mirzaghaderi G, Shaaf S, Badakhshan H, 2016. SSR Assessment of the Genetic Diversity of Emmer Wheat with Emphasis on Iranian Landraces (Triticum dicoccon Schrank). Genetic Resources and Crop Evolution, 63: 595-600.
- Ren J, Chen L, Sun D, You FM, Wang J, Peng Y, Nevo E, Beiles A, Sun D, Luo M-C, Peng J, 2013. SNP-Revealed Genetic Diversity in Wild Emmer Wheat Correlates with Ecological Factors. BMC Evolutionary Biology, 13 (1): 169.
- Röder MS, Korzun V, Wendehake K, Plaschke J, Tixier M-H, Leroy P, Ganal MW, 1998. A Microsatellite Map of Wheat. Genetics 149: 2007-2023.
- Salehi M, Arzani A, Talebi M, Rokhzadi A, 2018. Genetic Diversity of Wheat Wild Relatives Using SSR Markers. Genetika, 50 (1): 131-141.
- Salunkhe T, Tamhankar S, Tetali S, Zaharieva M, Bonnett D, Trethowan R, Misra S, 2013. Molecular Genetic Diversity Analysis in Emmer Wheat (Triticum dicoccon Schrank) from India. Genetic Resource and Crop Evolution, 60: 165-174.
- Sarkar S, Singh AM, Chakraborti M, Singh SK, Ahlawat AK, Singh GP, 2014. Analysis of Genetic Diversity among the Indian Bread Wheat Cultivars Using Microsatellite (SSR) Markers. Indian Journal Genetic, 74 (4): 502-505.
- Shizuka T, Mori N, Ozkan H, Ohta S, 2015. Chloroplast DNA Haplotype Variation within Two Natural Populations of Wild Emmer Wheat (Triticum turgidum ssp. dicoccoides) in Southern Turkey. Biotechnology&Biotechnological Equipment, 29 (3): 423-430.
- Tahır R, Abdul N, 2010. Germination Characteristics and Molecular Characterizations of Some Wheat Varieties in Sulaimanyah by SSR Marker. Turk Journal Biology, 34: 109-117.
- Verma SP, VN Pathak, OP Verma 2019. Interrelationship between Yield and Its Contributing Traits in Wheat (Triticum aestivum L). International Journal of Current Microbiology and Applied Science, 8 (2):3209-3215.
- Zaharieva M, Geleta AA, Al H, Satish CM, Monneveux P, 2010. Cultivated Emmer Wheat (Triticum dicoccon Schrank), An Old Crop with Promising Future. Genetic Resource and Crop Evolution, l57: 937-962.
- Zarei Abbasabad E, Mohammadi SA, Moghaddam M, Jalal Kamali MR, 2016. Analysis of Genetic Diversity, Population Structure and Linkage Disequilibrium in Iranian Wheat Landraces Using SSR Markers. Plant Genetic Resources, 1:1-8.