EN
ASSESSMENT OF CELL COUNTING METHOD BASED ON IMAGE PROCESSING FOR A MICROALGA CULTURE
Öz
Routine monitoring of microalgal growth requires the use of one of several methods such as cell counting under the microscope and measuring optical density (OD) with a spectrophotometer. Each of these methods has their advantages and disadvantages. For example, counting cells under the microscope can be time consuming, but it provides the best estimate of cell growth. Measuring OD is much quicker, however it doesn’t provide any information on cell numbers and debris in culture can interfere with OD measurements. Therefore, this study aimed to demonstrate the usefulness of an image processing approach for counting cells in a microalga culture. Results showed that highest correlations were observed between Utermöhl cell counts and OD measurements (r=0.99), ImageJ cell counts and OD measurements (r=0.99) and between Utermöhl and ImageJ cell counts (r=0.99). In the regression analysis, highest R2 values were obtained for Utermöhl vs OD (R2=0.99) and ImageJ vs OD (R2=0.99). Counting algal cells with ImageJ allows the analyst to complete the procedure 4 times faster than with manual Utermöhl procedure.
Anahtar Kelimeler
Kaynakça
- Abràmoff, M. D., Magalhães, P. J., Ram, S. J. (2004) Image processing with imageJ. Biophotonics International, 11: 36–41.
- Borowitzka, M. A., Borowitzka, L. J., Kessly, D. (1990) Effects of salinity increase on carotenoid accumulation in the green alga Dunaliella salina. Journal of Applied Phycology, 2: 111–119.
- Chu, W. L. (2012) Biotechnological applications of microalgae. IeJSME, 6, pp. 24-37.
- Edler, L., Elbrächter, M. (2010) The Utermöhl method for quantitative phytoplankton analysis, in: Karlson, B.; Cusack, C. and Bresnan, E. (Eds.), Microscopic and molecular methods for quantitative phytoplankton analysis. Paris, France, UNESCO, 110pp.
- Ferrando, N. S., Benítez, H. H., Gabellone, N. A., Claps, M. C., Altamirano, P. R. (2011) A quick and effective estimation of algal density by turbidimetry developed with Chlorella vulgaris cultures. Limnetica, 29;397–406.
- Gentleman, R. (2008) R programming for bioinformatics, Chapman and Hall/CRC, Seattle, Washington, U.S.A.
- Grishagin, I. V. (2015) Automatic cell counting with ImageJ. Analytical Biochemistry, 473: 63–65.
- Guedes, A. C., Amaro, H. M., Malcata, F. X. (2011) Microalgae as sources of carotenoids. Marine drugs, 9: 625-644.
Ayrıntılar
Birincil Dil
İngilizce
Konular
Hidrobiyoloji
Bölüm
Araştırma Makalesi
Yayımlanma Tarihi
31 Mayıs 2020
Gönderilme Tarihi
14 Aralık 2019
Kabul Tarihi
7 Mayıs 2020
Yayımlandığı Sayı
Yıl 2020 Cilt: 3 Sayı: 2
APA
Dökümcüoğlu, V. E., & Yılmaz, M. (2020). ASSESSMENT OF CELL COUNTING METHOD BASED ON IMAGE PROCESSING FOR A MICROALGA CULTURE. Mediterranean Fisheries and Aquaculture Research, 3(2), 75-81. https://doi.org//medfar.v3i54660.659398
AMA
1.Dökümcüoğlu VE, Yılmaz M. ASSESSMENT OF CELL COUNTING METHOD BASED ON IMAGE PROCESSING FOR A MICROALGA CULTURE. MedFAR. 2020;3(2):75-81. doi:/medfar.v3i54660.659398
Chicago
Dökümcüoğlu, Vesile Esra, ve Mete Yılmaz. 2020. “ASSESSMENT OF CELL COUNTING METHOD BASED ON IMAGE PROCESSING FOR A MICROALGA CULTURE”. Mediterranean Fisheries and Aquaculture Research 3 (2): 75-81. https://doi.org//medfar.v3i54660.659398.
EndNote
Dökümcüoğlu VE, Yılmaz M (01 Mayıs 2020) ASSESSMENT OF CELL COUNTING METHOD BASED ON IMAGE PROCESSING FOR A MICROALGA CULTURE. Mediterranean Fisheries and Aquaculture Research 3 2 75–81.
IEEE
[1]V. E. Dökümcüoğlu ve M. Yılmaz, “ASSESSMENT OF CELL COUNTING METHOD BASED ON IMAGE PROCESSING FOR A MICROALGA CULTURE”, MedFAR, c. 3, sy 2, ss. 75–81, May. 2020, doi: /medfar.v3i54660.659398.
ISNAD
Dökümcüoğlu, Vesile Esra - Yılmaz, Mete. “ASSESSMENT OF CELL COUNTING METHOD BASED ON IMAGE PROCESSING FOR A MICROALGA CULTURE”. Mediterranean Fisheries and Aquaculture Research 3/2 (01 Mayıs 2020): 75-81. https://doi.org//medfar.v3i54660.659398.
JAMA
1.Dökümcüoğlu VE, Yılmaz M. ASSESSMENT OF CELL COUNTING METHOD BASED ON IMAGE PROCESSING FOR A MICROALGA CULTURE. MedFAR. 2020;3:75–81.
MLA
Dökümcüoğlu, Vesile Esra, ve Mete Yılmaz. “ASSESSMENT OF CELL COUNTING METHOD BASED ON IMAGE PROCESSING FOR A MICROALGA CULTURE”. Mediterranean Fisheries and Aquaculture Research, c. 3, sy 2, Mayıs 2020, ss. 75-81, doi:/medfar.v3i54660.659398.
Vancouver
1.Vesile Esra Dökümcüoğlu, Mete Yılmaz. ASSESSMENT OF CELL COUNTING METHOD BASED ON IMAGE PROCESSING FOR A MICROALGA CULTURE. MedFAR. 01 Mayıs 2020;3(2):75-81. doi:/medfar.v3i54660.659398