Araştırma Makalesi
BibTex RIS Kaynak Göster
Yıl 2024, Cilt: 38 Sayı: 2, 226 - 230, 22.08.2024

Öz

Kaynakça

  • Adebule AP (2018). Plotting phylogenetic tree using MOLEBLAST; Technical Guide. Journal of Advancement in Medical and Life Sciences 6 (3): 1-3.
  • Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990). Basic local alignment search tool. Journal of Molecular Biology 215: 403–410. Doi:10.1016/S0022-2836(05)80360-2
  • Doyle JJ, Doyle JL (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. 19 (1): 11–15.
  • Hebert PDN, Ratnasingham S, De Waard JR (2003). Barcoding animal life: cytochrome c oxidase sub-unit 1 divergences among closely related species. Proceedings of the Royal Society of London. Series B: Biological Sciences 270: 96-S99. Doi:10.1098/rsbl.2003.0025
  • Hao D, Gu X, Xiao P, Peng Y (2013). Chemical and biological research of Clematis medicinal resources. Chinese Science Bulletin 58 (10): 1120-1129. Doi:10.1007/s11434-012-5628-7
  • Hillis DM, Dixon MT (1991). Ribosomal DNA: molecular evolution and phylogenetic inference. The Quarterly Review of Biology 66 (4): 411-453. Doi:10.1086/417338
  • NCBI (National Center for Biotechnology Information), (2016). Database resources of the nation-al center for biotechnology information. Nucleic Acids Research 44: 7- 19. Doi:10.1093/nar/gkv1290
  • NCBI (National Center for Biotechnology Information) (2023). MOLE-BLAST. https://www.ncbi.nlm.nih.gov/blast/moleblast/moleblast.cgi?CMD=Web (access date: 05.09.2023).
  • Şahin Negiş İ, İkten C, Ünlü L, Tunç İ (2022). Molecular characterization of Thripidae (Thysanoptera) species in Karaman, Konya and Mersin (Turkey). Selcuk Journal of Agriculture and Food Sciences 36 (2): 203-211. Doi:10.15316/SJAFS.2022.026
  • ThripsWiki (2023). Thrips Wiki-providing information on the World's thrips. http://thrips.info/wiki/Main_Page. (access date: 08.03.2023).
  • Timm AE, Stiller M, Frey JE (2008). A molecular identification key for economically important thrips species (Thysanoptera: Thripidae) in southern Africa. African Entomology 16 (1): 68-75. Doi:10.4001/1021-3589-16.1.68
  • Tunç İ, Hastenpflug-Vesmanis A (2016). Records and checklist of Thysanoptera in Turkey. Turkish Journal of Zoology 40: 769-778. Doi:10.3906/zoo-1512-37
  • Wolfe BE, Button JE, Santarelli M, Dutton RJ (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158: 422-433. Doi: 10.1016/j.cell.2014.05.041
  • Zhang SM, Mound LA, Hastings A (2018). Thysanoptera Chinensis. Thripidae Genera from China. https://keys.lucidcentral.org/keys/v3/thysanoptera_chinensis/index.html. (access date: 09.08.2023).

Drawing the Phylogenetic Tree of Tenothrips species Using MOLE-BLAST: A Phylogenetic Analysis Approach

Yıl 2024, Cilt: 38 Sayı: 2, 226 - 230, 22.08.2024

Öz

The search for the neighboring sequence of the query for the construction of the phylogenetic tree above led to the use of MOLE-BLAST. The construction of the phylogenetic tree was demonstrated using Tenothrips species from Muğla, Konya and Antalya in 2023. The Tenothrips species were found to show some degree of relationships based on the tree diagram in all regions. The study aimed to draw the phylogenetic tree of Tenothrips species using MOLE-BLAST, a computational tool widely used for phylogenetic analysis by COI and 18S Ribosomal RNA gene regions.

Kaynakça

  • Adebule AP (2018). Plotting phylogenetic tree using MOLEBLAST; Technical Guide. Journal of Advancement in Medical and Life Sciences 6 (3): 1-3.
  • Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990). Basic local alignment search tool. Journal of Molecular Biology 215: 403–410. Doi:10.1016/S0022-2836(05)80360-2
  • Doyle JJ, Doyle JL (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. 19 (1): 11–15.
  • Hebert PDN, Ratnasingham S, De Waard JR (2003). Barcoding animal life: cytochrome c oxidase sub-unit 1 divergences among closely related species. Proceedings of the Royal Society of London. Series B: Biological Sciences 270: 96-S99. Doi:10.1098/rsbl.2003.0025
  • Hao D, Gu X, Xiao P, Peng Y (2013). Chemical and biological research of Clematis medicinal resources. Chinese Science Bulletin 58 (10): 1120-1129. Doi:10.1007/s11434-012-5628-7
  • Hillis DM, Dixon MT (1991). Ribosomal DNA: molecular evolution and phylogenetic inference. The Quarterly Review of Biology 66 (4): 411-453. Doi:10.1086/417338
  • NCBI (National Center for Biotechnology Information), (2016). Database resources of the nation-al center for biotechnology information. Nucleic Acids Research 44: 7- 19. Doi:10.1093/nar/gkv1290
  • NCBI (National Center for Biotechnology Information) (2023). MOLE-BLAST. https://www.ncbi.nlm.nih.gov/blast/moleblast/moleblast.cgi?CMD=Web (access date: 05.09.2023).
  • Şahin Negiş İ, İkten C, Ünlü L, Tunç İ (2022). Molecular characterization of Thripidae (Thysanoptera) species in Karaman, Konya and Mersin (Turkey). Selcuk Journal of Agriculture and Food Sciences 36 (2): 203-211. Doi:10.15316/SJAFS.2022.026
  • ThripsWiki (2023). Thrips Wiki-providing information on the World's thrips. http://thrips.info/wiki/Main_Page. (access date: 08.03.2023).
  • Timm AE, Stiller M, Frey JE (2008). A molecular identification key for economically important thrips species (Thysanoptera: Thripidae) in southern Africa. African Entomology 16 (1): 68-75. Doi:10.4001/1021-3589-16.1.68
  • Tunç İ, Hastenpflug-Vesmanis A (2016). Records and checklist of Thysanoptera in Turkey. Turkish Journal of Zoology 40: 769-778. Doi:10.3906/zoo-1512-37
  • Wolfe BE, Button JE, Santarelli M, Dutton RJ (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158: 422-433. Doi: 10.1016/j.cell.2014.05.041
  • Zhang SM, Mound LA, Hastings A (2018). Thysanoptera Chinensis. Thripidae Genera from China. https://keys.lucidcentral.org/keys/v3/thysanoptera_chinensis/index.html. (access date: 09.08.2023).
Toplam 14 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Konular Entomoloji, Tarımda Entomoloji, Tarımda Bitki Biyoteknolojisi
Bölüm Araştırma Makalesi
Yazarlar

İnci Şahin Negiş 0000-0002-4481-2807

Erken Görünüm Tarihi 18 Ağustos 2024
Yayımlanma Tarihi 22 Ağustos 2024
Gönderilme Tarihi 5 Eylül 2023
Yayımlandığı Sayı Yıl 2024 Cilt: 38 Sayı: 2

Kaynak Göster

EndNote Şahin Negiş İ (01 Ağustos 2024) Drawing the Phylogenetic Tree of Tenothrips species Using MOLE-BLAST: A Phylogenetic Analysis Approach. Selcuk Journal of Agriculture and Food Sciences 38 2 226–230.

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