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Investigation of Interaction of Bismarck Brown Y- Palladium Complex with AS1411 G-quadruplex Aptamer

Yıl 2022, Cilt: 4 Sayı: 2, 116 - 122, 29.12.2022
https://doi.org/10.51435/turkjac.1203081

Öz

Artan metabolik aktivite ve metastaz, kanser hücrelerinin ana ve en bilinen özellikleridir. Hücrelerin artan aktivitesi, G-dörtlü yapıların oluşumunda artışa neden olur. G-quadruplex'in çeşitli ligandlarla stabilizasyonu veya destabilizasyonu, hücre proliferasyonunda bozulmalara neden olabilir. Dolayısıyla, bu ikincil yapının stabilizasyonu veya destabilizasyonu önemli antikanser ilaç hedefleridir. Bu çalışmada, Bismarck kahverengi Y-Pd kompleksi, kolay, tek aşamalı bir karıştırma yöntemiyle oluşturulmuştur. Kompleksin spektral özellikleri ve stokiyometrisi, Uv-vis spektrofotometrik olarak araştırıldı. 1:2, Bismarck Brown Y-Pd kompleksinin AS1411 G-dörtlü yapı ile etkileşimi spektrofotometrik titrasyon ile araştırıldı. Bağlanma sabitleri hesaplandı ve 4.38 (±1.96) x104 M-1 olarak bulundu. Kompleksin G-dörtlü konformasyon üzerindeki etkisi CD spektroskopisi ile araştırıldı. Etkileşimlerin varlığı, yüksek hassasiyetli LED kaynaklı floresan dedektör Qsep100 kapiler jel elektroforez sistemi kullanılarak DNA polimeraz durdurma testi ile desteklenmiştir.

Proje Numarası

2209-A -application number 1919B012006417

Kaynakça

  • [World Health Organization, WHO report on cancer: setting priorities, investing wisely and providing care for all, (2020).
  • C. Schiliro, B.L. Firestein, Mechanisms of metabolic reprogramming in cancer cells supporting enhanced growth and proliferation, Cells, 10(5), 2021, 1056. https://doi.org/10.3390/cells10051056
  • A.R. Yadav, S.K. Mohite, Cancer-A silent killer: An overview, Asian Pharm Res, 10(3), 2020, 213–216. 10.5958/2231-5691.2020.00036.2
  • M.A. Khan, M. Tania, J. Fu, Epigenetic role of thymoquinone: impact on cellular mechanism and cancer therapeutics, Drug Discov Today, 24(12), 2019, 2315–2322. https://doi.org/10.1016/j.drudis.2019.09.007
  • T. Das, D. Panda, P. Saha, J. Dash, Small molecule driven stabilization of promoter G-quadruplexes and transcriptional regulation of c-MYC, Bioconjugate Chem, 29(8), 2018, 2636–2645. https://doi.org/10.1021/acs.bioconjchem.8b00338
  • E. Bağda, E. Bağda, The recent studies about the interaction of phthalocyanines with DNA, Turkish Anal Chem, 3(1), 2021, 9–18. https://doi.org/10.51435/turkjac.938781
  • L. Hassani, Z. Fazeli, E. Safaei, H. Rastegar, M. Akbari, A spectroscopic investigation of the interaction between c-MYC DNA and tetrapyridinoporphyrazinatozinc (II), J Biol Phys, 40(3), 2014, 275–283. 10.1007/s10867-014-9348-x
  • D. Bhattacharyya, G. Mirihana Arachchilage, S. Basu, Metal cations in G-quadruplex folding and stability, Front Chem, 4, 2016, 38. https://doi.org/10.3389/fchem.2016.00038
  • Q. Li, J.F. Xiang, H. Zhang, Y.L. Tang, Searching drug-like anti-cancer compound (s) based on G-quadruplex ligands, Curr Pharm Design, 18(14), 2012, 1973–1983. 10.2174/138161212799958369
  • Z. Shen, K.A. Mulholland, Y. Zheng, C. Wu, Binding of anticancer drug daunomycin to a TGGGGT G-quadruplex DNA probed by all-atom molecular dynamics simulations: Additional pure groove binding mode and implications on designing more selective G-quadruplex ligands, Mol Model, 23(9), 2017, 1–11. 10.1007/s00894-017-3417-6
  • A. Awadasseid, X. Ma, Y. Wu, W. Zhang, G-quadruplex stabilization via small-molecules as a potential anti-cancer strategy, Biomed Pharmacother, 139, 2021, 111550. 10.1016/j.biopha.2021.111550
  • Q. Cao, Y. Li, E. Freisinger, P.Z. Qin, R.K. Sigel, Z.W. Mao, G-quadruplex DNA targeted metal complexes acting as potential anticancer drugs, Inorg Chem Front, 4(1), 2017, 10–32. https://doi.org/10.1039/C6QI00300A
  • R. Yazdian-Robati, P. Bayat, F. Oroojalian, M. Zargari, M. Ramezani, S.M. Taghdisi, K. Abnous, Therapeutic applications of AS1411 aptamer, an update review. Int Biol Macromol, 155, 2020, 1420–1431. 10.1016/j.ijbiomac.2019.11.118
  • J. Carvalho, J.L. Mergny, G.F. Salgado, J.A. Queiroz, C. Cruz, G-quadruplex, Friend or Foe: The Role of the G-quartet in Anticancer Strategies, Trends Mol Med, 26(9), 2020, 848–861. 10.1016/j.molmed.2020.05.002
  • J. Figueiredo, J. Lopes-Nunes, J. Carvalho, F. Antunes, M. Ribeiro, M.P.C. Campello, A. Paulo; A. Paiva, G.F. Salgado, J.A. Queiroz, J.L. Mergny, C. Cruz, AS1411 derivatives as carriers of G-quadruplex ligands for cervical cancer cells, Int Pharm, 568, 2019, 118511. 10.1016/j.ijpharm.2019.118511
  • E. Krieg, M.M. Bastings, P. Besenius, B. Rybtchinski, Supramolecular polymers in aqueous media, Chem Rev, 116(4), 2016, 2414–2477. https://doi.org/10.1021/acs.chemrev.5b00369
  • Y. Liu, J. Li, M. Chen, X. Chen, N. Zheng, Palladium-based nanomaterials for cancer imaging and therapy, Theranostics, 10(22), 2020, 10057. https://doi.org/10.7150%2Fthno.45990
  • E. Bağda, E. Bağda, A. Kocak, M. Durmuş, Investigation of Binding behaviour of a water-soluble gallium (III) phthalocyanine with double-stranded and G-quadruplex DNA via experimental and computational methods, Mol Struct, 1240, 2021, 130536. https://doi.org/10.1016/j.molstruc.2021.130536
  • H. Han, L.H. Hurley, M. Salazar, A DNA polymerase stop assay for G-quadruplex-interactive compounds, Nucleic acids research, 27(2), 1999, 537–542. https://doi.org/10.1093/nar/27.2.537
  • A. Dey, K. Pandav, M. Nath, R. Barthwal, R. Prasad, Binding characterization of anthraquinone derivatives by stabilizing G-quadruplex DNA leads to an anticancerous activity, Mol Ther-Nucl Acids, 2022. https://doi.org/10.1016/j.omtn.2022.11.008
  • H.J. Lipps, D. Rhodes, G-quadruplex structures: in vivo evidence and function. Trends Cell Biol, 19(8), 2009. 414–422. https://doi.org/10.1016/j.tcb.2009.05.002
  • S.M. Haider, S. Neidle, G.N. Parkinson, A structural analysis of G-quadruplex/ligand interactions. Biochimie, 93(8), 2011, 1239–1251. https://doi.org/10.1016/j.biochi.2011.05.012
  • H. Li, Y. Tang, S. Lei, Z. You, T. Yang, S. Wang, A Spectroscopic Study of the Interaction Between the Bismarck Brown R–Eu (III) Complex and DNA, Appl Spectrosc, 85(4), 2018, 791–799. https://doi.org/10.1007/s10812-018-0720-7
  • J. Alzeer, B.R. Vummidi, P.J. Roth, N.W. Luedtke, Guanidinium‐modified phthalocyanines as high‐affinity G‐Quadruplex fluorescent probes and transcriptional regulators, Angew Chem Int Edit, 48(49), 2009, 9362–9365. https://doi.org/10.1002/anie.200903685
  • A.K. Jain, V.V. Reddy, A. Paul, and S. Bhattacharya, Synthesis and evaluation of a novel class of G-quadruplex-stabilizing small molecules based on the 1, 3-phenylene-bis (piperazinyl benzimidazole) system, Biochemistry, 48(45), 2009, 10693–10704. https://doi.org/10.1021/bi9003815
  • Z. Bagheri, B. Ranjbar, H. Latifi, M.I. Zibaii, T.T Moghadam, A. Azizi, Spectral properties and thermal stability of AS1411 G-quadruplex, Int Biol Macromol, 72, 2015, 806–811. https://doi.org/10.1016/j.ijbiomac.2014.09.016
Yıl 2022, Cilt: 4 Sayı: 2, 116 - 122, 29.12.2022
https://doi.org/10.51435/turkjac.1203081

Öz

Destekleyen Kurum

TÜBİTAK

Proje Numarası

2209-A -application number 1919B012006417

Kaynakça

  • [World Health Organization, WHO report on cancer: setting priorities, investing wisely and providing care for all, (2020).
  • C. Schiliro, B.L. Firestein, Mechanisms of metabolic reprogramming in cancer cells supporting enhanced growth and proliferation, Cells, 10(5), 2021, 1056. https://doi.org/10.3390/cells10051056
  • A.R. Yadav, S.K. Mohite, Cancer-A silent killer: An overview, Asian Pharm Res, 10(3), 2020, 213–216. 10.5958/2231-5691.2020.00036.2
  • M.A. Khan, M. Tania, J. Fu, Epigenetic role of thymoquinone: impact on cellular mechanism and cancer therapeutics, Drug Discov Today, 24(12), 2019, 2315–2322. https://doi.org/10.1016/j.drudis.2019.09.007
  • T. Das, D. Panda, P. Saha, J. Dash, Small molecule driven stabilization of promoter G-quadruplexes and transcriptional regulation of c-MYC, Bioconjugate Chem, 29(8), 2018, 2636–2645. https://doi.org/10.1021/acs.bioconjchem.8b00338
  • E. Bağda, E. Bağda, The recent studies about the interaction of phthalocyanines with DNA, Turkish Anal Chem, 3(1), 2021, 9–18. https://doi.org/10.51435/turkjac.938781
  • L. Hassani, Z. Fazeli, E. Safaei, H. Rastegar, M. Akbari, A spectroscopic investigation of the interaction between c-MYC DNA and tetrapyridinoporphyrazinatozinc (II), J Biol Phys, 40(3), 2014, 275–283. 10.1007/s10867-014-9348-x
  • D. Bhattacharyya, G. Mirihana Arachchilage, S. Basu, Metal cations in G-quadruplex folding and stability, Front Chem, 4, 2016, 38. https://doi.org/10.3389/fchem.2016.00038
  • Q. Li, J.F. Xiang, H. Zhang, Y.L. Tang, Searching drug-like anti-cancer compound (s) based on G-quadruplex ligands, Curr Pharm Design, 18(14), 2012, 1973–1983. 10.2174/138161212799958369
  • Z. Shen, K.A. Mulholland, Y. Zheng, C. Wu, Binding of anticancer drug daunomycin to a TGGGGT G-quadruplex DNA probed by all-atom molecular dynamics simulations: Additional pure groove binding mode and implications on designing more selective G-quadruplex ligands, Mol Model, 23(9), 2017, 1–11. 10.1007/s00894-017-3417-6
  • A. Awadasseid, X. Ma, Y. Wu, W. Zhang, G-quadruplex stabilization via small-molecules as a potential anti-cancer strategy, Biomed Pharmacother, 139, 2021, 111550. 10.1016/j.biopha.2021.111550
  • Q. Cao, Y. Li, E. Freisinger, P.Z. Qin, R.K. Sigel, Z.W. Mao, G-quadruplex DNA targeted metal complexes acting as potential anticancer drugs, Inorg Chem Front, 4(1), 2017, 10–32. https://doi.org/10.1039/C6QI00300A
  • R. Yazdian-Robati, P. Bayat, F. Oroojalian, M. Zargari, M. Ramezani, S.M. Taghdisi, K. Abnous, Therapeutic applications of AS1411 aptamer, an update review. Int Biol Macromol, 155, 2020, 1420–1431. 10.1016/j.ijbiomac.2019.11.118
  • J. Carvalho, J.L. Mergny, G.F. Salgado, J.A. Queiroz, C. Cruz, G-quadruplex, Friend or Foe: The Role of the G-quartet in Anticancer Strategies, Trends Mol Med, 26(9), 2020, 848–861. 10.1016/j.molmed.2020.05.002
  • J. Figueiredo, J. Lopes-Nunes, J. Carvalho, F. Antunes, M. Ribeiro, M.P.C. Campello, A. Paulo; A. Paiva, G.F. Salgado, J.A. Queiroz, J.L. Mergny, C. Cruz, AS1411 derivatives as carriers of G-quadruplex ligands for cervical cancer cells, Int Pharm, 568, 2019, 118511. 10.1016/j.ijpharm.2019.118511
  • E. Krieg, M.M. Bastings, P. Besenius, B. Rybtchinski, Supramolecular polymers in aqueous media, Chem Rev, 116(4), 2016, 2414–2477. https://doi.org/10.1021/acs.chemrev.5b00369
  • Y. Liu, J. Li, M. Chen, X. Chen, N. Zheng, Palladium-based nanomaterials for cancer imaging and therapy, Theranostics, 10(22), 2020, 10057. https://doi.org/10.7150%2Fthno.45990
  • E. Bağda, E. Bağda, A. Kocak, M. Durmuş, Investigation of Binding behaviour of a water-soluble gallium (III) phthalocyanine with double-stranded and G-quadruplex DNA via experimental and computational methods, Mol Struct, 1240, 2021, 130536. https://doi.org/10.1016/j.molstruc.2021.130536
  • H. Han, L.H. Hurley, M. Salazar, A DNA polymerase stop assay for G-quadruplex-interactive compounds, Nucleic acids research, 27(2), 1999, 537–542. https://doi.org/10.1093/nar/27.2.537
  • A. Dey, K. Pandav, M. Nath, R. Barthwal, R. Prasad, Binding characterization of anthraquinone derivatives by stabilizing G-quadruplex DNA leads to an anticancerous activity, Mol Ther-Nucl Acids, 2022. https://doi.org/10.1016/j.omtn.2022.11.008
  • H.J. Lipps, D. Rhodes, G-quadruplex structures: in vivo evidence and function. Trends Cell Biol, 19(8), 2009. 414–422. https://doi.org/10.1016/j.tcb.2009.05.002
  • S.M. Haider, S. Neidle, G.N. Parkinson, A structural analysis of G-quadruplex/ligand interactions. Biochimie, 93(8), 2011, 1239–1251. https://doi.org/10.1016/j.biochi.2011.05.012
  • H. Li, Y. Tang, S. Lei, Z. You, T. Yang, S. Wang, A Spectroscopic Study of the Interaction Between the Bismarck Brown R–Eu (III) Complex and DNA, Appl Spectrosc, 85(4), 2018, 791–799. https://doi.org/10.1007/s10812-018-0720-7
  • J. Alzeer, B.R. Vummidi, P.J. Roth, N.W. Luedtke, Guanidinium‐modified phthalocyanines as high‐affinity G‐Quadruplex fluorescent probes and transcriptional regulators, Angew Chem Int Edit, 48(49), 2009, 9362–9365. https://doi.org/10.1002/anie.200903685
  • A.K. Jain, V.V. Reddy, A. Paul, and S. Bhattacharya, Synthesis and evaluation of a novel class of G-quadruplex-stabilizing small molecules based on the 1, 3-phenylene-bis (piperazinyl benzimidazole) system, Biochemistry, 48(45), 2009, 10693–10704. https://doi.org/10.1021/bi9003815
  • Z. Bagheri, B. Ranjbar, H. Latifi, M.I. Zibaii, T.T Moghadam, A. Azizi, Spectral properties and thermal stability of AS1411 G-quadruplex, Int Biol Macromol, 72, 2015, 806–811. https://doi.org/10.1016/j.ijbiomac.2014.09.016
Toplam 26 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Konular Analitik Kimya
Bölüm Research Articles
Yazarlar

Esra Bağda 0000-0003-1900-4944

Rümeysa Durak 0000-0001-8345-3248

Efkan Bağda 0000-0002-3925-3430

Didem Duman 0000-0002-0900-0336

Ebubekir Ayhan 0000-0002-5371-8425

Proje Numarası 2209-A -application number 1919B012006417
Erken Görünüm Tarihi 23 Aralık 2022
Yayımlanma Tarihi 29 Aralık 2022
Gönderilme Tarihi 12 Kasım 2022
Kabul Tarihi 30 Kasım 2022
Yayımlandığı Sayı Yıl 2022 Cilt: 4 Sayı: 2

Kaynak Göster

APA Bağda, E., Durak, R., Bağda, E., Duman, D., vd. (2022). Investigation of Interaction of Bismarck Brown Y- Palladium Complex with AS1411 G-quadruplex Aptamer. Turkish Journal of Analytical Chemistry, 4(2), 116-122. https://doi.org/10.51435/turkjac.1203081
AMA Bağda E, Durak R, Bağda E, Duman D, Ayhan E. Investigation of Interaction of Bismarck Brown Y- Palladium Complex with AS1411 G-quadruplex Aptamer. TurkJAC. Aralık 2022;4(2):116-122. doi:10.51435/turkjac.1203081
Chicago Bağda, Esra, Rümeysa Durak, Efkan Bağda, Didem Duman, ve Ebubekir Ayhan. “Investigation of Interaction of Bismarck Brown Y- Palladium Complex With AS1411 G-Quadruplex Aptamer”. Turkish Journal of Analytical Chemistry 4, sy. 2 (Aralık 2022): 116-22. https://doi.org/10.51435/turkjac.1203081.
EndNote Bağda E, Durak R, Bağda E, Duman D, Ayhan E (01 Aralık 2022) Investigation of Interaction of Bismarck Brown Y- Palladium Complex with AS1411 G-quadruplex Aptamer. Turkish Journal of Analytical Chemistry 4 2 116–122.
IEEE E. Bağda, R. Durak, E. Bağda, D. Duman, ve E. Ayhan, “Investigation of Interaction of Bismarck Brown Y- Palladium Complex with AS1411 G-quadruplex Aptamer”, TurkJAC, c. 4, sy. 2, ss. 116–122, 2022, doi: 10.51435/turkjac.1203081.
ISNAD Bağda, Esra vd. “Investigation of Interaction of Bismarck Brown Y- Palladium Complex With AS1411 G-Quadruplex Aptamer”. Turkish Journal of Analytical Chemistry 4/2 (Aralık 2022), 116-122. https://doi.org/10.51435/turkjac.1203081.
JAMA Bağda E, Durak R, Bağda E, Duman D, Ayhan E. Investigation of Interaction of Bismarck Brown Y- Palladium Complex with AS1411 G-quadruplex Aptamer. TurkJAC. 2022;4:116–122.
MLA Bağda, Esra vd. “Investigation of Interaction of Bismarck Brown Y- Palladium Complex With AS1411 G-Quadruplex Aptamer”. Turkish Journal of Analytical Chemistry, c. 4, sy. 2, 2022, ss. 116-22, doi:10.51435/turkjac.1203081.
Vancouver Bağda E, Durak R, Bağda E, Duman D, Ayhan E. Investigation of Interaction of Bismarck Brown Y- Palladium Complex with AS1411 G-quadruplex Aptamer. TurkJAC. 2022;4(2):116-22.