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Investigation of the Structural, Electronic and Biological Properties of (E)-4-(((3-(1H-benzo[d]imidazol-2-yl)phenyl)imino)methyl)benzene-1,3-diol Compound at Theoretical and Molecular Levels

Cilt: 16 Sayı: 3 17 Ağustos 2026
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Investigation of the Structural, Electronic and Biological Properties of (E)-4-(((3-(1H-benzo[d]imidazol-2-yl)phenyl)imino)methyl)benzene-1,3-diol Compound at Theoretical and Molecular Levels

Öz

In this study, the structural, electronic, and biological properties of the Schiff base derivative (E)-4-(((3-(1H-benzo[d]imidazol-2-yl)phenyl)imino)methyl)benzene-1,3-diol (BIMSB) were investigated in detail using theoretical methods. Quantum chemical calculations were performed at the B3LYP/6-31G(d,p) and B3PW91/6-31G(d,p) levels using DFT. The optimized geometry of the molecule was evaluated using electrostatic potential (MEP) maps, and reactive sites were identified. Chemical stability and reactivity analyses were performed by calculating the HOMO-LUMO energy levels and the band gap between them. Intramolecular interactions were investigated using the Natural Bonding Orbital (NBO) method, demonstrating the contribution of hyperconjugative interactions to structural stability. Furthermore, the Mulliken charge distribution was analyzed to identify electrophilic and nucleophilic centers. The molecule's nonlinear optical (NLO) properties were evaluated using dipole moment, polarizability, and hyperpolarizability parameters, demonstrating the potential of BIMSB in NLO applications. Potential biological interactions of the compound with acetylcholinesterase (AChE) enzymes (PDB: 4B84 and 4EY7) were investigated using molecular docking, and it was determined that it exhibited high binding affinities (-8.56 and -8.57 kcal/mol) with both enzymes. Finally, ADMET analyses performed using Admetlab 2.0 revealed that the compound has pharmacokinetics and potential for drug development. All the data obtained indicate that BIMSB is a promising candidate molecule for pharmaceutical and technological applications.

Anahtar Kelimeler

Schiff base, DFT, MEP, NBO, Molecular Docking, ADMET

Kaynakça

  1. Ahmad, I., Khan, H., & Serdaroğlu, G. (2023). Physicochemical properties, drug likeness, ADMET, DFT studies, and in vitro antioxidant activity of oxindole derivatives. Computational biology and chemistry, 104, 107861.
  2. Anza, M., Endale, M., Cardona, L., Cortes, D., Eswaramoorthy, R., Zueco, J., Rico, H., Trelis, M., & Abarca, B. (2021). Antimicrobial activity, in silico molecular docking, ADMET and DFT analysis of secondary metabolites from roots of three Ethiopian medicinal plants. Advances and Applications in Bioinformatics and Chemistry, 117–132.
  3. Araújo, J. Q., Lima, J. A., Pinto, A. d. C., De Alencastro, R. B., & Albuquerque, M. G. (2011). Docking of the alkaloid geissospermine into acetylcholinesterase: a natural scaffold targeting the treatment of Alzheimer’s disease. Journal of Molecular Modeling, 17(6), 1401–1412.
  4. Babu, P. D. S., Periandy, S., Mohan, S., Ramalingam, S., & Jayaprakash, B. (2011). Molecular structure and vibrational investigation of benzenesulfonic acid methyl ester using DFT (LSDA, B3LYP, B3PW91 and MPW1PW91) theory calculations. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 78(1), 168–178.
  5. Burley, S. K., Berman, H. M., Bhikadiya, C., Bi, C., Chen, L., Di Costanzo, L., Christie, C., Dalenberg, K., Duarte, J. M., & Dutta, S. (2019). RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy. Nucleic acids research, 47(D1), D464–D474.
  6. Çimen, E., Gören, K., Tahiroğlu, V., & Yıldıko, Ü. (2025). The Theoretical Calculations by DFT Method and Analysis ADME, Molecular Docking of 1-(1-(4-hydroxybutyl)-6-methyl-4-phenyl-2-thioxohexahydropyrimidin-5-yl)ethan-1-one (pyrimidine-thiones) Compound [1-(1-(4-hidroksibütil)-6-metil-4-fenil-2-tioksoheksahidropirimidin-5-il)etan-1-on Bileşiğinin Moleküler Doking, ADME Analiz ve DFT Yöntemi ile Teorik Hesaplamalar]. Osmaniye Korkut Ata Üniversitesi Fen Bilimleri Enstitüsü Dergisi, 8(3), 1129–1145. https://doi.org/10.47495/okufbed.1562370
  7. El-Shamy, N. T., Alkaoud, A. M., Hussein, R. K., Ibrahim, M. A., Alhamzani, A. G., & Abou-Krisha, M. M. (2022). DFT, ADMET and Molecular Docking Investigations for the Antimicrobial Activity of 6, 6′-Diamino-1, 1′, 3, 3′-tetramethyl-5, 5′-(4-chlorobenzylidene) bis [pyrimidine-2, 4 (1H, 3H)-dione]. Molecules, 27(3), 620.
  8. Farihi, A., Bouhrim, M., Chigr, F., Elbouzidi, A., Bencheikh, N., Zrouri, H., Nasr, F. A., Parvez, M. K., Alahdab, A., & Ahami, A. O. T. (2023). Exploring medicinal herbs’ therapeutic potential and molecular docking analysis for compounds as potential inhibitors of human acetylcholinesterase in Alzheimer’s disease treatment. Medicina, 59(10), 1812.
  9. Flores-Holguín, N., Frau, J., & Glossman-Mitnik, D. (2021). In silico pharmacokinetics, ADMET study and conceptual DFT analysis of two plant cyclopeptides isolated from rosaceae as a computational Peptidology approach. Frontiers in Chemistry, 9, 708364.
  10. G.W.T. M.J. Frisch, H. B. S., G.E. Scuseria, M.A. Robb, J.R. Cheeseman, G. Scalmani, V. Barone, B. Mennucci, G.A. Petersson, H. Nakatsuji, M. Caricato, X. Li, H.P. Hratchian, A.F. Izmaylov, J. Bloino, G. Zheng, J.L. Sonnenberg, M. Hada, M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, Y. Honda, O. Kitao, H. Nakai, T. Vreven, J.A. Montgomery Jr., J.E. Peralta, F. Ogliaro, M. Bearpark, J.J. Heyd, E. Brothers, K.N. Kudin, V.N. Staroverov, R. Kobayashi, J. Normand, K. Raghavachari, A. Rendell, J.C. Burant, S.S. Iyengar, J. Tomasi, M. Cossi, N. Rega, J.M. Millam, M. Klene, J.E. Knox, J.B. Cross, V. Bakken, C. Adamo, J. Jaramillo, R. Gomperts, R.E. Stratmann, O. Yazyev, A.J. Austin, R. Cammi, C. Pomelli, J.W. Ochterski, R.L. Martin, K. Morokuma, V.G. Zakrzewski, G.A. Voth, P. Salvador, J.J. Dannenberg, S. Dapprich, A.D. Daniels, Ö. Farkas, J.B. Foresman, J.V. Ortiz, J. Cioslowski, D.J. Fox. (2009). Gaussian 09. In (Version Revision A.02)

Kaynak Göster

APA
Kartal, B. (2026). Investigation of the Structural, Electronic and Biological Properties of (E)-4-(((3-(1H-benzo[d]imidazol-2-yl)phenyl)imino)methyl)benzene-1,3-diol Compound at Theoretical and Molecular Levels. Karadeniz Fen Bilimleri Dergisi, 16(3), 1047-1067. https://doi.org/10.31466/kfbd.1779548
AMA
1.Kartal B. Investigation of the Structural, Electronic and Biological Properties of (E)-4-(((3-(1H-benzo[d]imidazol-2-yl)phenyl)imino)methyl)benzene-1,3-diol Compound at Theoretical and Molecular Levels. KFBD. 2026;16(3):1047-1067. doi:10.31466/kfbd.1779548
Chicago
Kartal, Barış. 2026. “Investigation of the Structural, Electronic and Biological Properties of (E)-4-(((3-(1H-benzo[d]imidazol-2-yl)phenyl)imino)methyl)benzene-1,3-diol Compound at Theoretical and Molecular Levels”. Karadeniz Fen Bilimleri Dergisi 16 (3): 1047-67. https://doi.org/10.31466/kfbd.1779548.
EndNote
Kartal B (01 Ağustos 2026) Investigation of the Structural, Electronic and Biological Properties of (E)-4-(3-(1H-benzo[d]imidazol-2-yl)phenyl)imino)methyl)benzene-1,3-diol Compound at Theoretical and Molecular Levels. Karadeniz Fen Bilimleri Dergisi 16 3 1047–1067.
IEEE
[1]B. Kartal, “Investigation of the Structural, Electronic and Biological Properties of (E)-4-(((3-(1H-benzo[d]imidazol-2-yl)phenyl)imino)methyl)benzene-1,3-diol Compound at Theoretical and Molecular Levels”, KFBD, c. 16, sy 3, ss. 1047–1067, Ağu. 2026, doi: 10.31466/kfbd.1779548.
ISNAD
Kartal, Barış. “Investigation of the Structural, Electronic and Biological Properties of (E)-4-(((3-(1H-benzo[d]imidazol-2-yl)phenyl)imino)methyl)benzene-1,3-diol Compound at Theoretical and Molecular Levels”. Karadeniz Fen Bilimleri Dergisi 16/3 (01 Ağustos 2026): 1047-1067. https://doi.org/10.31466/kfbd.1779548.
JAMA
1.Kartal B. Investigation of the Structural, Electronic and Biological Properties of (E)-4-(((3-(1H-benzo[d]imidazol-2-yl)phenyl)imino)methyl)benzene-1,3-diol Compound at Theoretical and Molecular Levels. KFBD. 2026;16:1047–1067.
MLA
Kartal, Barış. “Investigation of the Structural, Electronic and Biological Properties of (E)-4-(((3-(1H-benzo[d]imidazol-2-yl)phenyl)imino)methyl)benzene-1,3-diol Compound at Theoretical and Molecular Levels”. Karadeniz Fen Bilimleri Dergisi, c. 16, sy 3, Ağustos 2026, ss. 1047-6, doi:10.31466/kfbd.1779548.
Vancouver
1.Barış Kartal. Investigation of the Structural, Electronic and Biological Properties of (E)-4-(((3-(1H-benzo[d]imidazol-2-yl)phenyl)imino)methyl)benzene-1,3-diol Compound at Theoretical and Molecular Levels. KFBD. 01 Ağustos 2026;16(3):1047-6. doi:10.31466/kfbd.1779548