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BEBEK MAMALARINDA DİREKT PCR YÖNTEMİ İLE CRONOBACTER SPP. TESPİTİ

Yıl 2016, Cilt: 41 Sayı: 6, 411 - 418, 01.12.2016

Öz

Cronobacter spp., bebeklerde ve çocuklarda hayati tehlike yaratan menenjit, sepsis ve nekrotizanenterokolit enfeksiyonlarının önemli bir sebebidir. Çeşitli klinik vakalarda Cronobacter spp. enfeksiyonuile bebek maması tüketimi epidemiyolojik olarak ilişkili bulunmuştur. Bu araştırmada bebek mamasındapatojenin hızlı tanısı için direkt PCR yöntemi üzerine modifikasyon çalışmaları yapılmıştır. Bebekmamasında direkt PCR yöntemi ile 102KOB/mL düzeyinde ve 4 saatlik ön zenginleştirme sonrasındauygulanan PCR yöntemi ile 1 KOB/mL seviyesinde Cronobacter spp. belirlenebilmiştir. Cronobacterspp. tespitinde uygulanan PCR yönteminin kültürel belirleme yöntemlerine oranla daha hızlı ve dahaduyarlı olduğu saptanmıştır

Kaynakça

  • Healy B, Cooney S, O'Brien S, Iversen C, Whyte P, Nally J, Callanan JJ, Fanning S. 2010. Cronobacter (Enterobacter sakazakii): An opportunitic foodborne pathogen. Foodborne Pathog Dis, 7(4): 339-347.
  • Holy O, Forsythe S. 2014. Cronobacter spp. as emerging causes of healthcare-associated infection. J Hosp Infect, 86: 169-177.
  • Gurtler JB, Kornacki JL, Beuchat LR. 2005. Enterobacter sakazakii: A coliform of increased concern to infant health. Int J Food Microbiol, 104: 1-34.
  • Forsythe SJ. 2005. Enterobacter sakazakii and other bacteria in powdered infant milk formula. Matern Child Nutr, 1: 44-50.
  • Dancer GI, Mah JH, Rhee MS, Hwang IG, Kang DH. 2009. Resistance of Enterobacter sakazakii (Cronobacter spp.) to environmental stresses. J Appl Microbiol 107: 1606-1614.
  • Jaradat ZW, Al Mousa W, Elbetieha A, Al Nabulsi A, Tall DT. 2014. Cronobacter spp. – opportunistic food-borne pathogens. A review of their virulence and environmental-adaptive traits. J Med Microbiol, 63: 1023-1037.
  • Craven HM, McAuley CM, Duffy LL, Fegan N. 2010. Distribution, prevalence and persistence of Cronobacter (Enterobacter sakazakii) in the nonprocessing and processing environments of five milk powder factories. J Appl Microbiol, 109 (3): 1044-1052.
  • Gurtler JB, Beuchat LR. 2007. Survival of Enterobacter sakazakii in powdered infant formula as affected by composition, water activity, and temperature. J Food Protect, 70: 1579-1586.
  • Kucerova E, Clifton SW, Xia X-Q, Long F, Porwollik S, Fulton L, Fronick C, Minx P, Kyung K, Warren W, Fulton R, Feng D, Wollam A, Shah N, Bhonagiri V, Nash WE, Hallsworth-Pepin K, Wilson RK, McClelland M, Forsythe SJ. 2010. Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other Cronobacter species. PLoS ONE, 5(3): e9556.
  • Kandhai MC. 2010. Detection, occurence, growth and inactivtion of Cronobacter spp. (Enterobacter sakazakii). PhD. Thesis. Wageningen University, 240 p., Wageningen.
  • Lehner A, Nitzsche S, Breeuwer P, Deip B, Thelen K, Stephan R. 2006. Comparison of two chromogenic media and evaluation of two molecular based identification systems for Enterobacter sakazakii detection. BMC Microbiol, 6: 15.
  • Liu Y, Cai X, Zhang X, Gao Q, Yang X, Zheng Z, Luo M, Huang X. 2006. Real time PCR using TaqMan and SYBR Green for detection of Enterobacter sakazakii in infant formula. J Microbiol Methods, 65: 21-31.
  • Krascsenicsova K, Trncikova T. 2008. Detection and quantification of Enterobacter sakazakii by real-time 5’-nuclease polymerase chain reaction targeting the pale gene. Food Anal Method, 1 (2): 85-94.
  • Zimmermann J, Schmidt H, Loessner MJ, Weiss A. 2014. Development of a rapid detection system for opportunistic pathogenic Cronobacter spp. in powdered milk products. Food Microbiol, 42: 19-25.
  • Stoop B, Lehner A, Iversen C, Fanning S, Stephan R. 2009. Development and evaluation of rpoB-based PCR systems to differentiate the six proposed species within the genus Cronobacter. Int J Food Microbiol, 136 (2): 165-168.
  • Pan Z, Cui J, Lyu G, Du X, Qin L, Guo Y, Xu B, Li W, Cui Z, Zhao C. 2014. Isolation and molecular typing of Cronobacter spp. in commercial powdered ınfant formula and follow-up formula. Foodborne Pathog Dis, 11 (6): 456-461.
  • Ye Y, Wu Q, Zhou Y, Dong X, Zhang J. 2008. Analysis of major band of Enterobacter sakazakii by ERIC-PCR and development of a species-specific PCR for detection of E. sakazakii in dry food samples. J Microbiol Methods, 75: 392-397.
  • Feer CF, Cernela N, Bolzan S, Lehner A, Stephan R. 2011. Evaluation of three commercially available real-time PCR based systems for detection of Cronobacter species. Int J Food Microbiol, 146 (2): 200-202.
  • Kuhnert P, Korczak BM, Stephan R, Joosten H, Iversen C. 2009. Phylogeny and prediction of genetic similarity of Cronobacter and related taxa by multilocus sequence analysis (MLSA). Int J Food Microbiol, 136: 152-158.
  • Ye Y, Ling N, Han Y, Cao X, Wu Q. 2015. Detection of Cronobacter on gluB gene and differentiation of four Cronobacter species by polymerase chain reaction-restriction fragment length polymorphism typing. J Food Safety, 35 (3): 422-427.
  • Mohan Nair MJ, Venkitanarayanan KS. 2006. Cloning and sequencing of the ompA gene of Enterobacter sakazakii and development of an ompA-targeted PCR for rapid detection of Enterobacter sakazakii in infant formula. Appl Environ Microbiol, 72 (4): 2539-2546.
  • Wang X, Zhu C, Xu X, Zhou G. 2012. Real-time PCR with internal amplification control for the detection of Cronobacter spp. (Enterobacter sakazakii) in food samples. Food Control, 25 (1): 144-149.
  • Seo KH, Brackett RE. 2005. Rapid, specific detection of Enterobacter sakazakii in infant formula using a real-time PCR assay. J Food Protect, 68: 59-63.
  • Gutierrez-Rojo R, Torres-Chavollo E. 2007. A rapid polymerase chain reaction assay for Enterobacter sakazakii detection in infant milk formulas. J Rapid Meth Aut Mic, 15: 345-358.
  • Hu S, Yigang Y, Li R, Wu X, Xiao X, Wu H. 2016. Rapid detection of Cronobacter sakazakii by real-time PCR based on the cgcA gene and TaqMan probe with internal amplification control. Can J Microbiol, 62: 191-200.
  • Anon. 2006. Milk and milk products - Detection of Enterobacter sakazakii, International Standards Organization, ISO/TS 22964, 13 p.
  • Çakır İ, Çakmakçı ML. 2005. Gıdalarda patojen mikroorganizma aranmasında kullanılan moleküler yöntemler. Elektronik Mikrobiyoloji Dergisi TR, 3 (12): 1-7.

DETECTION OF CRONOBACTER SPP. IN POWDERED INFANT FORMULA BY PCR

Yıl 2016, Cilt: 41 Sayı: 6, 411 - 418, 01.12.2016

Öz

Cronobacter spp. causes meningitis, sepsis, and necrotizing enterocolitis in neonates and infants.Cronobacter spp. infections have been epidemiologically associated with consumption of reconstitutedpowdered infant formula. In this study, the modified PCR method for the rapid detection of Cronobacterspp. were performed. Detection limit of PCR assay for Cronobacter spp. was determined to be 102CFU/mL directly and 1 CFU/mL after 4-h of enrichment step in infant formula. The result showed thatthe modified PCR based technique described in this study was found more rapid and sensitive than theconventional methods for detection of Cronobacter spp. from infant formula

Kaynakça

  • Healy B, Cooney S, O'Brien S, Iversen C, Whyte P, Nally J, Callanan JJ, Fanning S. 2010. Cronobacter (Enterobacter sakazakii): An opportunitic foodborne pathogen. Foodborne Pathog Dis, 7(4): 339-347.
  • Holy O, Forsythe S. 2014. Cronobacter spp. as emerging causes of healthcare-associated infection. J Hosp Infect, 86: 169-177.
  • Gurtler JB, Kornacki JL, Beuchat LR. 2005. Enterobacter sakazakii: A coliform of increased concern to infant health. Int J Food Microbiol, 104: 1-34.
  • Forsythe SJ. 2005. Enterobacter sakazakii and other bacteria in powdered infant milk formula. Matern Child Nutr, 1: 44-50.
  • Dancer GI, Mah JH, Rhee MS, Hwang IG, Kang DH. 2009. Resistance of Enterobacter sakazakii (Cronobacter spp.) to environmental stresses. J Appl Microbiol 107: 1606-1614.
  • Jaradat ZW, Al Mousa W, Elbetieha A, Al Nabulsi A, Tall DT. 2014. Cronobacter spp. – opportunistic food-borne pathogens. A review of their virulence and environmental-adaptive traits. J Med Microbiol, 63: 1023-1037.
  • Craven HM, McAuley CM, Duffy LL, Fegan N. 2010. Distribution, prevalence and persistence of Cronobacter (Enterobacter sakazakii) in the nonprocessing and processing environments of five milk powder factories. J Appl Microbiol, 109 (3): 1044-1052.
  • Gurtler JB, Beuchat LR. 2007. Survival of Enterobacter sakazakii in powdered infant formula as affected by composition, water activity, and temperature. J Food Protect, 70: 1579-1586.
  • Kucerova E, Clifton SW, Xia X-Q, Long F, Porwollik S, Fulton L, Fronick C, Minx P, Kyung K, Warren W, Fulton R, Feng D, Wollam A, Shah N, Bhonagiri V, Nash WE, Hallsworth-Pepin K, Wilson RK, McClelland M, Forsythe SJ. 2010. Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other Cronobacter species. PLoS ONE, 5(3): e9556.
  • Kandhai MC. 2010. Detection, occurence, growth and inactivtion of Cronobacter spp. (Enterobacter sakazakii). PhD. Thesis. Wageningen University, 240 p., Wageningen.
  • Lehner A, Nitzsche S, Breeuwer P, Deip B, Thelen K, Stephan R. 2006. Comparison of two chromogenic media and evaluation of two molecular based identification systems for Enterobacter sakazakii detection. BMC Microbiol, 6: 15.
  • Liu Y, Cai X, Zhang X, Gao Q, Yang X, Zheng Z, Luo M, Huang X. 2006. Real time PCR using TaqMan and SYBR Green for detection of Enterobacter sakazakii in infant formula. J Microbiol Methods, 65: 21-31.
  • Krascsenicsova K, Trncikova T. 2008. Detection and quantification of Enterobacter sakazakii by real-time 5’-nuclease polymerase chain reaction targeting the pale gene. Food Anal Method, 1 (2): 85-94.
  • Zimmermann J, Schmidt H, Loessner MJ, Weiss A. 2014. Development of a rapid detection system for opportunistic pathogenic Cronobacter spp. in powdered milk products. Food Microbiol, 42: 19-25.
  • Stoop B, Lehner A, Iversen C, Fanning S, Stephan R. 2009. Development and evaluation of rpoB-based PCR systems to differentiate the six proposed species within the genus Cronobacter. Int J Food Microbiol, 136 (2): 165-168.
  • Pan Z, Cui J, Lyu G, Du X, Qin L, Guo Y, Xu B, Li W, Cui Z, Zhao C. 2014. Isolation and molecular typing of Cronobacter spp. in commercial powdered ınfant formula and follow-up formula. Foodborne Pathog Dis, 11 (6): 456-461.
  • Ye Y, Wu Q, Zhou Y, Dong X, Zhang J. 2008. Analysis of major band of Enterobacter sakazakii by ERIC-PCR and development of a species-specific PCR for detection of E. sakazakii in dry food samples. J Microbiol Methods, 75: 392-397.
  • Feer CF, Cernela N, Bolzan S, Lehner A, Stephan R. 2011. Evaluation of three commercially available real-time PCR based systems for detection of Cronobacter species. Int J Food Microbiol, 146 (2): 200-202.
  • Kuhnert P, Korczak BM, Stephan R, Joosten H, Iversen C. 2009. Phylogeny and prediction of genetic similarity of Cronobacter and related taxa by multilocus sequence analysis (MLSA). Int J Food Microbiol, 136: 152-158.
  • Ye Y, Ling N, Han Y, Cao X, Wu Q. 2015. Detection of Cronobacter on gluB gene and differentiation of four Cronobacter species by polymerase chain reaction-restriction fragment length polymorphism typing. J Food Safety, 35 (3): 422-427.
  • Mohan Nair MJ, Venkitanarayanan KS. 2006. Cloning and sequencing of the ompA gene of Enterobacter sakazakii and development of an ompA-targeted PCR for rapid detection of Enterobacter sakazakii in infant formula. Appl Environ Microbiol, 72 (4): 2539-2546.
  • Wang X, Zhu C, Xu X, Zhou G. 2012. Real-time PCR with internal amplification control for the detection of Cronobacter spp. (Enterobacter sakazakii) in food samples. Food Control, 25 (1): 144-149.
  • Seo KH, Brackett RE. 2005. Rapid, specific detection of Enterobacter sakazakii in infant formula using a real-time PCR assay. J Food Protect, 68: 59-63.
  • Gutierrez-Rojo R, Torres-Chavollo E. 2007. A rapid polymerase chain reaction assay for Enterobacter sakazakii detection in infant milk formulas. J Rapid Meth Aut Mic, 15: 345-358.
  • Hu S, Yigang Y, Li R, Wu X, Xiao X, Wu H. 2016. Rapid detection of Cronobacter sakazakii by real-time PCR based on the cgcA gene and TaqMan probe with internal amplification control. Can J Microbiol, 62: 191-200.
  • Anon. 2006. Milk and milk products - Detection of Enterobacter sakazakii, International Standards Organization, ISO/TS 22964, 13 p.
  • Çakır İ, Çakmakçı ML. 2005. Gıdalarda patojen mikroorganizma aranmasında kullanılan moleküler yöntemler. Elektronik Mikrobiyoloji Dergisi TR, 3 (12): 1-7.
Toplam 27 adet kaynakça vardır.

Ayrıntılar

Diğer ID JA77HT26DZ
Bölüm Araştırma Makalesi
Yazarlar

Gökçe Polat Yemiş Bu kişi benim

İbrahim Çakır Bu kişi benim

Kadir Halkman Bu kişi benim

Yayımlanma Tarihi 1 Aralık 2016
Yayımlandığı Sayı Yıl 2016 Cilt: 41 Sayı: 6

Kaynak Göster

APA Yemiş, G. P., Çakır, İ., & Halkman, K. (2016). BEBEK MAMALARINDA DİREKT PCR YÖNTEMİ İLE CRONOBACTER SPP. TESPİTİ. Gıda, 41(6), 411-418.
AMA Yemiş GP, Çakır İ, Halkman K. BEBEK MAMALARINDA DİREKT PCR YÖNTEMİ İLE CRONOBACTER SPP. TESPİTİ. GIDA. Aralık 2016;41(6):411-418.
Chicago Yemiş, Gökçe Polat, İbrahim Çakır, ve Kadir Halkman. “BEBEK MAMALARINDA DİREKT PCR YÖNTEMİ İLE CRONOBACTER SPP. TESPİTİ”. Gıda 41, sy. 6 (Aralık 2016): 411-18.
EndNote Yemiş GP, Çakır İ, Halkman K (01 Aralık 2016) BEBEK MAMALARINDA DİREKT PCR YÖNTEMİ İLE CRONOBACTER SPP. TESPİTİ. Gıda 41 6 411–418.
IEEE G. P. Yemiş, İ. Çakır, ve K. Halkman, “BEBEK MAMALARINDA DİREKT PCR YÖNTEMİ İLE CRONOBACTER SPP. TESPİTİ”, GIDA, c. 41, sy. 6, ss. 411–418, 2016.
ISNAD Yemiş, Gökçe Polat vd. “BEBEK MAMALARINDA DİREKT PCR YÖNTEMİ İLE CRONOBACTER SPP. TESPİTİ”. Gıda 41/6 (Aralık 2016), 411-418.
JAMA Yemiş GP, Çakır İ, Halkman K. BEBEK MAMALARINDA DİREKT PCR YÖNTEMİ İLE CRONOBACTER SPP. TESPİTİ. GIDA. 2016;41:411–418.
MLA Yemiş, Gökçe Polat vd. “BEBEK MAMALARINDA DİREKT PCR YÖNTEMİ İLE CRONOBACTER SPP. TESPİTİ”. Gıda, c. 41, sy. 6, 2016, ss. 411-8.
Vancouver Yemiş GP, Çakır İ, Halkman K. BEBEK MAMALARINDA DİREKT PCR YÖNTEMİ İLE CRONOBACTER SPP. TESPİTİ. GIDA. 2016;41(6):411-8.

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